Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04321 ATGGATTCTTTTTCGCCTCTTACTCTTTCTGAGGATGTCCGTTTTCGCACTGTAACAAAGGTGATGGCACAAATTCTACTGCATGGGACCCTTCATGCCACAATCTATGAGGTGGATAACCTCAACGCTGGTGGTAATATTTTAACCAAGGTTGACGATGATGAAAATGCGAGGTTTGCTGCAATCGGAGATGGAATTGATAGTGAAAACACATATCCGAAGTGGAAACTGTCATTGACGCTGGTAGGAGAAAACCCCGCTGTGAACGACACATGTCTCACGGTGATTGAATTCGATGACAAAGTCTCTGACTTCACAGTGGCACTGTCGCTGAAAGCCCTTCAGAAGACGTCCCTCTCAGAGTTGGAGCTCAGGCCGCTAGTGAACCAGAAGAGAGAGGTGGCAGGGGGAGATTGTGAGAACTGTCGAGGGTTCCAGAAGGAGAAGGAGGAATGA 456 0.4759 MDSFSPLTLSEDVRFRTVTKVMAQILLHGTLHATIYEVDNLNAGGNILTKVDDDENARFAAIGDGIDSENTYPKWKLSLTLVGENPAVNDTCLTVIEFDDKVSDFTVALSLKALQKTSLSELELRPLVNQKREVAGGDCENCRGFQKEKEE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04321 151 ProSiteProfiles Riboflavin synthase alpha chain lumazine-binding repeat profile. 37 143 IPR026017 -
Pumo4g04321 151 SUPERFAMILY Riboflavin synthase domain-like 73 134 IPR017938 -
Pumo4g04321 151 Gene3D - 32 134 IPR023366 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04321 Pumo-Chr4 84228808 84231463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04321 22 45 Phospholipase D Gene Family (Wang group) AT3G15730 83.333 1.60e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04321 - - gmx:100809163 62.3882