Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04274 ATGCTAGAAAGGGATGTGTTAGAAACGTCTCCTGGTGTCAGATGGGATGATGTTGCAGGCCTCACTGAAGCCAAAAGGCTTCTAGAAGAAGCCGTTGTACTTCCCTTATGGATGCCCGAATATTTCCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAGACGCTTCTTGCTAAGGCAGTTGCTACTGAATGCGGTACCACTTTCTTTAACGTTTCTTCTGCCACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGGTGCTTGTTTGATCTTGCAAGAGCATATGCACCCAGTACAATTTTCATCGATGAAATTGATTCTCTATGCAATGCTAGGGGAGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAAGCACTGAGGAGAAGGTTGGAAAAACGTATATACATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAGGACAGTAGAGGTGGCCCCTGATGTGAACATAGATGAAGTGGCTCGGCGGACAGAGGGGTATAGTGGAGATGACTTGACAAATGTATGTCGTGATGCTTCACTGAATGGTATGAGGCGTAAGATAGCGGGAAAGACGCGTGATGAGATCAAGAACATGTCCAAGGATGAGATTTCCAAGGATCCTGTTGCAATGTGTGATTTTAAAGAAGCGTTGAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTGCCGAATTTGGATCAGCATAA 903 0.4507 MLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLRTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFKEALKKVQPSVSQADIERHEKWFAEFGSA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04274 300 Pfam Vps4 C terminal oligomerisation domain 253 298 IPR015415 -
Pumo4g04274 300 Pfam AAA+ lid domain 211 252 IPR041569 -
Pumo4g04274 300 FunFam Katanin p60 ATPase-containing subunit A1 10 178 - -
Pumo4g04274 300 Gene3D - 10 291 IPR027417 -
Pumo4g04274 300 Pfam ATPase family associated with various cellular activities (AAA) 52 189 IPR003959 GO:0005524|GO:0016887
Pumo4g04274 300 SMART AAA_5 48 191 IPR003593 GO:0016887
Pumo4g04274 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 297 IPR027417 -
Pumo4g04274 300 ProSitePatterns AAA-protein family signature. 161 180 IPR003960 GO:0005524|GO:0016887
Pumo4g04274 300 PANTHER AAA DOMAIN-CONTAINING 1 299 - -
Pumo4g04274 300 Gene3D - 190 276 - -
Pumo4g04274 300 FunFam Katanin p60 ATPase-containing subunit A1 190 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04274 Pumo-Chr4 83647330 83649304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04274 4 281 Calmodulin-binding Proteins AT3G56690 39.362 1.00e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04274 K07767 - mnt:21402373 586.645