Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04269 ATGGAGAAAGAAGGTCTTGGGCTTGAAATCACAGAGCTAAGGTTGGGGCTTCCCGGTGGGGAATTGCCTGAGAAGAAGAAGAGGGTGTTCTCCCAGATTGAAGGTGAAAACAGCTCCTCCGAAGACAGCAAGATGCAAACCAATTGCAAGAATCAAGTGGTGGGGTGGCCTCCCGTGTGTTCCTACCGCAAGAAGAACAGTACCGTCAATGAAACCAAAATGTACGTCAAAGTTAGCATGGACGGGGCTCCTTTCTTGCGTAAAATTGATTTGGCTATGCACAAGGGATATTCCGAGTTGGCCTTCGCCTTGGACAAGTTCTTTGGTTGCTATGGAATCGGCGAAGCGTTGAAGGATGCGGACAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAATGA 549 0.4736 MEKEGLGLEITELRLGLPGGELPEKKKRVFSQIEGENSSSEDSKMQTNCKNQVVGWPPVCSYRKKNSTVNETKMYVKVSMDGAPFLRKIDLAMHKGYSELAFALDKFFGCYGIGEALKDADNAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04269 182 FunFam Auxin-responsive protein 67 169 - -
Pumo4g04269 182 SUPERFAMILY CAD & PB1 domains 67 158 - -
Pumo4g04269 182 Pfam AUX/IAA family 35 165 IPR033389 -
Pumo4g04269 182 ProSiteProfiles PB1 domain profile. 73 161 IPR000270 GO:0005515
Pumo4g04269 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 162 IPR003311 GO:0005634|GO:0006355
Pumo4g04269 182 Gene3D - 67 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04269 Pumo-Chr4 83602216 83605486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04269 70 180 B3 DNA Binding Superfamily AT4G23980 34.234 7.46e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo4g04269 AUX_IAA 4.8e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04269 K14484 - gmx:100811879 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04269 4 83602216 83605486 Pumo4g04269 4 83602216 83605486 ECH