Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04268 ATGGATGTTACTTCTCTGGGTTCAAATAGCAATACCCAAACTGACCAACACCCTTTGTTGATGGAGCAGCCGGAAACCCGTAATGGTCATCAGCATGTAATTGATATTACAAGGAATGGTGAAGCTCTAACAACGTCATCTCATGATGATCAACATTCTGAAATGCATTTACCGCAGAATGAAGATCAATCAGCTGGGAATGCACAAGATTCCACTCATCAAACATCTTCATCTTCTGCACCCAGATTAAACTCTAGAAACTCAGCTTCATTGAGAAGAGGTGAGGGATATGGTCATCGCGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCCATCGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGATTGTGGGTTATGCGTCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGGAACCGTAATCAAAACACTGAACAAGATACCTCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACTTATACTGCCATCTATGTCTCTCATGTCTCAGACGAGGAGAACGGTCATGCTACACAGTCAGCCACAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTGGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCGCAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCAATTAATGCTTTACCAATCTTCAAGTTCAAATTGAAGAACAACGAAAATGGTGATGGCCAGGATGTCAATGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTGTTTCACGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTACGAGTAATGGAGGGTCACCTTCAGCCTGGGACTCTACTCATTAA 1272 0.4206 MDVTSLGSNSNTQTDQHPLLMEQPETRNGHQHVIDITRNGEALTTSSHDDQHSEMHLPQNEDQSAGNAQDSTHQTSSSSAPRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQNTEQDTSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGHATQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDGQDVNAIDEGGILAAGTEKERMISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKSEVGTSNGGSPSAWDSTH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04268 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
Pumo4g04268 423 SMART ring_2 364 404 IPR001841 -
Pumo4g04268 423 SUPERFAMILY RING/U-box 356 411 - -
Pumo4g04268 423 MobiDBLite consensus disorder prediction 44 103 - -
Pumo4g04268 423 Pfam Ring finger domain 364 405 IPR001841 -
Pumo4g04268 423 FunFam E3 ubiquitin-protein ligase 347 414 - -
Pumo4g04268 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Pumo4g04268 423 MobiDBLite consensus disorder prediction 58 91 - -
Pumo4g04268 423 MobiDBLite consensus disorder prediction 169 188 - -
Pumo4g04268 423 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Pumo4g04268 423 SMART ringv_2 363 405 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04268 Pumo-Chr4 83586277 83590465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04268 1 415 C3H Transcription Factor Family AT1G80400 57.583 5.98e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04268 - - gmx:100819729 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04268 4 83586277 83590465 Pumo4g04268 4 83586277 83590465 ECH