Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04255 ATGGGATTGACGGATGATGCAAGATATCCCCCTAACCCATATGGTATCATCAGTCACCACCGAGGTTATGGTTATCAGAATTCTCCATATTCCCCTCCACTTGATACTGAATATTCCCAAGATGATAATGATGAAAATGAAGAACAAGAGCAGTTAGAAGGGGATGATGAGGTTGATCAAAGTAACAACCTTCAGCTTCCCCAAAAGGATGCTGATGAAGAAGATGGCATGGATGGGGTTGGTGATGAAAATGATGATAACCATAATGATGAGGATGATGATGATGATGAGGAGGAGGAGGAGGTGGAGGTGGAGGTGGAGGCGGAGGAGAATAAGCAGATTGATTATTATGCCACTAAGAGTGAAGATGAGTTAGATTGGCACCCAAAAAAGCAAAAGCTGAAGAGCTTGATTTCGACCTATGAACTTGCGCCTCGAGTGCCGGCACCATCAGCTACAGCTGCAGCTGCAGCTCCAGCTCCAGCTCCCTCAGTTCCTAAATCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACCGAGAACGAGACATTTGTTCTTCTTGATGCATGGGGTGATAGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATGCGAGGAATGGCAACAAGTTGCAAAAATGGTATCACAAGTTTCAAAAATTGAAAGGACGGATACTCAGTGCAGAAATCGTCTAGATACATTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCCAGATAGTGATGGTGGAGCTTGCAAATGGGTTTATTTTAAAAGGATGGATGAGCTAATGTCTTCTCCTCCGCAACAAGCTGGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTTACGAATCCCAGAGTTTATTTGAACCATGCAAATGGGTTGGATGAAATGAGGGATAGTCCTGAGAATACAGAATCTACCGGTGAACAGGGTTCCGATGGACTTCAAGCAAAGAAAAGAAGGAAAGGAAGGGGCAGTGGTGAGGCTTCTTCCTTCAGGTTACTTGCTGATTCCATTCAGAAATTCAGTAAGATATATGAGAAGATAGAAAATAGTAAAAGGCAGCAGATGGTGGAACTGGAAAAGATGAGGATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATTTTAGAGAATTTGCAGTGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAACGATGATTCTGCTGAGAATGGTACGTGA 1230 0.4285 MGLTDDARYPPNPYGIISHHRGYGYQNSPYSPPLDTEYSQDDNDENEEQEQLEGDDEVDQSNNLQLPQKDADEEDGMDGVGDENDDNHNDEDDDDDEEEEEVEVEVEAEENKQIDYYATKSEDELDWHPKKQKLKSLISTYELAPRVPAPSATAAAAAPAPAPSVPKSSSGGRNSLTDWTENETFVLLDAWGDRFLQHGRKSLRCEEWQQVAKMVSQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDSDGGACKWVYFKRMDELMSSPPQQAGLSCGLDSGEYVFTNPRVYLNHANGLDEMRDSPENTESTGEQGSDGLQAKKRRKGRGSGEASSFRLLADSIQKFSKIYEKIENSKRQQMVELEKMRMDFHKELETQKRQILENLQCEISKLEQRNDENDDSAENGT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04255 409 MobiDBLite consensus disorder prediction 149 176 - -
Pumo4g04255 409 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 161 400 IPR044823 -
Pumo4g04255 409 MobiDBLite consensus disorder prediction 299 335 - -
Pumo4g04255 409 MobiDBLite consensus disorder prediction 1 129 - -
Pumo4g04255 409 MobiDBLite consensus disorder prediction 109 129 - -
Pumo4g04255 409 Coils Coil 351 404 - -
Pumo4g04255 409 Gene3D - 179 241 - -
Pumo4g04255 409 ProSiteProfiles Myb-like domain profile. 179 236 IPR001005 -
Pumo4g04255 409 Pfam Myb/SANT-like DNA-binding domain 178 265 IPR044822 -
Pumo4g04255 409 FunFam trihelix transcription factor ASIL2 179 241 - -
Pumo4g04255 409 MobiDBLite consensus disorder prediction 38 57 - -
Pumo4g04255 409 MobiDBLite consensus disorder prediction 75 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04255 Pumo-Chr4 83457925 83459616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04255 320 407 Trihelix Transcription Factor Family AT3G14180 38.636 3.61e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo4g04255 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04255 - - gmx:100814194 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04255 4 83457925 83459616 Pumo4g04255 4 83457925 83459616 ECH