Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04253 ATGATGTTATCAAACCTTAAAGAAATAGCCGAGAAAAATCTGAATGCTGCTGTTGTTGATTGCTGCATTGGAATTCCACTTTATTTTACTGATCTTCAGAGGAGGGCAGTCTTGGATGCTGCCACTATTGCGGGTTTGCATCCACTTCGCCTGTTTCATGAAACAACAGCAACTGCATTGGCTTATGGAATTTACAAGACTGATCTTCCTGAAAATGATCAGCTGAATGTTGCCTTTGTTGATGTTGGACATGCTAGCATGCAAGTATGCATTGCTGGATTTAAAAAGGGGCAGCTGAAAGTGTTGTCCCAATCATATGATAGGTCCCTAGGTGGGAGGGACTTTGACGAGGTTCTGTTCAATCATTTTGCTGCGAAGTTTAAGGAGGAGTACAAGATTGATGTATTCCAAAACGCCAAGGCTTGTCTGAGGTTGAGGGCTGCTTGCGAGAAGCTGAAGAAGGTGCTTAGTGCTAATCCAGAGGCACCTTTGAACATTGAGTGCTTAATGGATGAGAAAGACGTCAGAGGCTTTATCAAGCGTGATGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGGGTGAAGGGACCTTTGGAGAAGGCAGTTGCAGAGGCAGGTCTTACAGTCGAGAATGTACACATGGTTGAGATGGTTGGTTCTGGATCTCGTGTACCAGCTATAAACAAAATATTGACAGAGTTCTTCCAAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGTTGTGCATTGCAGTGTGCAATTCTCAGTCCAACTTTTAAAGTACGAGAGTTTCAGGTCAACGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGATTCAAGTTCCAATGCACAGGAAAGTGGACCAGATAATAAACAAAGTACCCTTGTTTTCCCCAAGGGAAATCCCATACCTAGTTTCAAGGCACTGACCATCTACAGGTCAGGAACCTTTTCCATTGATGTTCAATATGATGATGTGAGTGGTTTGCAAACACCTGCAAAGATCAGCACATATACTATTGGCCCTTTCCAGTCTACAAAAAATGAAAAAGCAAAAATTAAAGTGAAAGTTCGGTTGAATCTGCATGGAATTGTATCTATTGAATCTGCAACTCTACTGGAAGAGGAAGAAACTGAGGTTCCAGTTTCCAAAGAATCAGCAGGAGAAAATACCAAGATGGAAACTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCTAGCACCAATGACAATGATGTTAACATGCAAGATGCTAATGCCAAGGCAACTGCTGATGCCCCTGGAGCCGAAAATGGTACCCCCGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGTTGAGGCTCCAAAGAAAAAAGTTAAGAAAATAAACATTCCTGTGGTAGAGTTAGTTTATGGAGCAATGGCAGCTGCAGATGTTCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATAGAGTGATGGAGGAAACAAAAGATAAGAAAAATGCAGTAGAAGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGGGAAGCATTTACTGCCAAACTTCAGGAGGTGGAAGACTGGCTATATGAGGATGGCGAAGATGAAACTAAAGGCGTATACATTGCCAAGCTAGAAGAGCTCAAGAAGCAAGGTGATCCAATTGAAGAACGCTATAAAGAATATATGGAGAGGGGTACGGTAATTGATCAACTCGTCTATTGTATAAATAGTTATAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAGAAGGTCTTGAATGAATGTGTGGAAGCTGAGAACTGGCTGAGGGAGAAAAAACAGCAACAGGACTCACTTTCAAAATATGCCACCCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCAATTATGATGAAACCAAAGCCACCACCACCCAAACCAGCTACTCCAGAAGCACCAGCAACTCCACCTCCTCAGGGTGGTGAGCAGTCGCAGCAGCAGCAGCAGCAACAGCAGCAACAACCACCTGAGGAGAATCCTAATGCCAACACTAATGAAAATGCAGGGGACAATGCTAATCCAGCTCCGCCACCAGCATCTGCACCAATGGAGACTGAAAAACCAGAGAACACAGACTCTGCTTAA 2244 0.4309 MMLSNLKEIAEKNLNAAVVDCCIGIPLYFTDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLSQSYDRSLGGRDFDEVLFNHFAAKFKEEYKIDVFQNAKACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKAVAEAGLTVENVHMVEMVGSGSRVPAINKILTEFFQKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKDSSSNAQESGPDNKQSTLVFPKGNPIPSFKALTIYRSGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSTKNEKAKIKVKVRLNLHGIVSIESATLLEEEETEVPVSKESAGENTKMETDEAPADAAAPPSTNDNDVNMQDANAKATADAPGAENGTPEAGDKPVQMDTDTKVEAPKKKVKKINIPVVELVYGAMAAADVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIDSEREAFTAKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYMERGTVIDQLVYCINSYREAAMSNDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLSKYATPVLLSADIRKKAEAVDRFCKPIMMKPKPPPPKPATPEAPATPPPQGGEQSQQQQQQQQQQPPEENPNANTNENAGDNANPAPPPASAPMETEKPENTDSA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04253 747 Gene3D - 1 255 - -
Pumo4g04253 747 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 265 512 IPR029047 -
Pumo4g04253 747 PANTHER HSC70CB, ISOFORM G-RELATED 1 717 - -
Pumo4g04253 747 PRINTS 70kDa heat shock protein signature 21 41 - -
Pumo4g04253 747 PRINTS 70kDa heat shock protein signature 213 229 - -
Pumo4g04253 747 PRINTS 70kDa heat shock protein signature 358 374 - -
Pumo4g04253 747 PRINTS 70kDa heat shock protein signature 244 264 - -
Pumo4g04253 747 MobiDBLite consensus disorder prediction 381 460 - -
Pumo4g04253 747 FunFam Heat shock 70 kDa protein 4 479 589 - -
Pumo4g04253 747 Pfam Hsp70 protein 1 580 IPR013126 GO:0005524|GO:0140662
Pumo4g04253 747 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 482 579 IPR029048 -
Pumo4g04253 747 Gene3D - 479 588 IPR029048 -
Pumo4g04253 747 Gene3D Actin; Chain A, domain 4 111 194 - -
Pumo4g04253 747 Coils Coil 565 585 - -
Pumo4g04253 747 SUPERFAMILY Actin-like ATPase domain 1 66 IPR043129 -
Pumo4g04253 747 SUPERFAMILY Actin-like ATPase domain 76 261 IPR043129 -
Pumo4g04253 747 FunFam Heat shock 70 kDa protein 4 1 86 - -
Pumo4g04253 747 FunFam Heat shock 70 kDa protein 4 111 194 - -
Pumo4g04253 747 MobiDBLite consensus disorder prediction 385 404 - -
Pumo4g04253 747 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 268 477 IPR029047 -
Pumo4g04253 747 MobiDBLite consensus disorder prediction 667 747 - -
Pumo4g04253 747 Gene3D - 67 241 - -
Pumo4g04253 747 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 591 678 IPR029048 -
Pumo4g04253 747 MobiDBLite consensus disorder prediction 691 724 - -
Pumo4g04253 747 MobiDBLite consensus disorder prediction 670 690 - -
Pumo4g04253 747 ProSiteProfiles Ig-like domain profile. 226 344 IPR007110 -
Pumo4g04253 747 FunFam Heat shock 70 kDa protein 14 268 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04253 Pumo-Chr4 83446244 83450111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04253 1 282 Calmodulin-binding Proteins AT1G16030 36.491 2.16e-53 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04253 4 83446244 83450111 Pumo4g04253 4 83446244 83450111 ECH
Pumo4g04253 4 83446244 83450111 Pumo7g00205 7 2332048 2337791 PCT