Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04240 ATGGGACTTTGGAGTGTGATGAGTAGGCAACTGTTTATTGTTACAGTGAATTCAGAAAGCAGGTGGTGGATATGGCTTATTGTGATAGGAGGAGTTATTGTTGTACTTATATCCTGTTACTTCTGCCGCATAATCTGGAGAAAATATAAGATAGAAGCTGACAGAAAAAAGCAGCAGAAGAAACTGATAGAGGAAATTGGAGCCAGTAGCGTGGCTTCCACTATTAATCACAAAACAAAGAAACATAGCAAAGAGGACAAGACTAACTATGAAGTGCAGATATTTAACTTTGCAAGCATTGCTGCTGCTACAGACAACTTTTCAGTTGCAAATAAGTTAGGAGAGGGTGGCTTTGGACCAGTTTATAAGGGGAAACTGCCTAATGGACAAGAAATAGCAATAAAGAGACTTTCTAGTGAATCAGGGCAAGGGTTGGTGGAGTTCAAAAATGAAGCCAAACTCATAGCAAAACTGCAGCATACTAATTTAGTAAGGATTTTGGGGTTCTGCATACAAAATGAAGAAAATATATTAATCTATGAGTACATGCCCAACAAAAGTTTGGACTTCCATCTCTTTGATTCTATGAAAAGTGAAACAATAGTTTGGGAGAAAAGATTCAACATCATTGAAGGTATAGCTCATGGGTTGGTTTATCTCCATCATTTTTCAAGATTAAAAGTGATTCACCGTGACTTGAAAGCTAGCAACATAATACTTGATTATGAGATGAAGCCAAAAATTAGTGATTTTGGCATGGCAAGAATATTTGATTTGAAAGGAACAGAAGAGAACACAAGAAGAATTGTTGGAACATATGGATACATGGCTCCAGAGTATGCAATAAATGGTGTTGTGTCCATCAAAATAGATGCATACAGCTTTGGTGTACTGCTACTAGAGATACTTAGTGGCAAGAAGAATAATAGTCGCTATCATTCAGATCGCCCACTCAACCTCATAGGACACGGGTGGCAGTTCTGGAATGAAGGTAGAGCTTTGGAGTTAATAGATCCATCATTGAATGAATTATGTTCTCATAATGAAGTTTTGAGATATATTCATATCGGCCTCTTGTGTGTACAAGATCAAGCGACAGATAGACCTACCATGTTAGATATTGTTTCATTTCTATCAAATGATACAATCCAACTTCCCCAACCAAAGCAACCAGCATTCTTCATCAATGAGGTTGTGGAAGAGTCAGAGCTTCCTTACAGCAAGCAAGAACATCATTCCTTAAATGACGTGACAATTTCTAGTACCCATGGAAGATAA 1278 0.3764 MGLWSVMSRQLFIVTVNSESRWWIWLIVIGGVIVVLISCYFCRIIWRKYKIEADRKKQQKKLIEEIGASSVASTINHKTKKHSKEDKTNYEVQIFNFASIAAATDNFSVANKLGEGGFGPVYKGKLPNGQEIAIKRLSSESGQGLVEFKNEAKLIAKLQHTNLVRILGFCIQNEENILIYEYMPNKSLDFHLFDSMKSETIVWEKRFNIIEGIAHGLVYLHHFSRLKVIHRDLKASNIILDYEMKPKISDFGMARIFDLKGTEENTRRIVGTYGYMAPEYAINGVVSIKIDAYSFGVLLLEILSGKKNNSRYHSDRPLNLIGHGWQFWNEGRALELIDPSLNELCSHNEVLRYIHIGLLCVQDQATDRPTMLDIVSFLSNDTIQLPQPKQPAFFINEVVEESELPYSKQEHHSLNDVTISSTHGR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04240 425 Gene3D Transferase(Phosphotransferase) domain 1 183 390 - -
Pumo4g04240 425 SUPERFAMILY Protein kinase-like (PK-like) 89 401 IPR011009 -
Pumo4g04240 425 Pfam Domain of unknown function (DUF3403) 380 425 IPR021820 GO:0004674
Pumo4g04240 425 SMART serkin_6 107 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04240 425 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 72 182 - -
Pumo4g04240 425 Gene3D Phosphorylase Kinase; domain 1 76 182 - -
Pumo4g04240 425 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 183 386 - -
Pumo4g04240 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 423 - -
Pumo4g04240 425 ProSiteProfiles Protein kinase domain profile. 107 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04240 425 Pfam Protein tyrosine and serine/threonine kinase 109 378 IPR001245 GO:0004672|GO:0006468
Pumo4g04240 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04240 Pumo-Chr4 83337941 83344299 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04240 76 413 Receptor kinase-like Gene Family AT4G11480 54.118 7.19e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g04240 PK_Tyr_Ser-Thr 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04240 - - aprc:113853906 582.408