Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04236 ATGAGCACAGGTGTGCTTCCCACTCTGCTGTTCTTTCTAATCCTCATCCTCCTGCTACTTAACCCCTCTGAACCCGAACAAATTGCCATTTACTGGGGTCAAAACAGCAATGAGGGAAACCTTACTGAAACATGTGCACCAGGAAAATACTCGCATGTAATCATAGCCTTCCTTTCCACCTTTGGGAATGGCCAAACCCCTCAACTCAACCTGGCTGGTCATTGTGATCCCTCTTCTAATGGGTGCACTAATATTGGGACAGAGATTAAGAAATGTCAAAAGCAAGGGATCAAGGTGATGCTCTCTATTGGAGGAGGAACTGGTAATTACTCTATAACTTCCGATGAGGAAGCCCAAAATGTGTCGGATTTCCTCTGGAACAATTTCCTTGGTGGCTTCTCCTCATCACGCCCATTCGGGGACGCAGTATTAGATGGCGTCGACTTTGACATAGAGCTAGGCGATAATACATCATTCATGGGGAATCTTGCACAATACCTTAAAGCAAATTCAAATTTGTACTTGTCAGCAGCACCTCAGTGTCCGTTTCCTGATGCTAAGCTGGGTTCGGCCATTGGTACCGGCCTTTTTGACTATGTCTGGGTACAATTCTATAACAATCCTTCATGCCATTATACCCAAAACAATGTCGATAGCTTTCTAAAATCATGGAGCGAGTGGGCCACATCATTGAAAGGAGGGGAACTGTTTCTGGGGTTACCAGCAGATCAAGCTGCAGCTCCAGGCGGAGGTTATGTTCCACCTGATGTATTAATGTCTCAGATCTTACCTGCAATAAAAGTGTCAACAATTTACGGAGGTGTCATGTTGTGGTCAAGGTACTATGATAAAATGAGTGGATACAGTACCCGCATTCAAAATCTTCAAATAAATGGGACAGCAAACCCTCTATGCACACGGAAAAGTCCCGCATGCAGGAGCCATGAGGGCGGTTTCGTGGAGCGTGTTGGTAACATGTCCACAGTTGGTATCAAAGTTTATGAAGACGACAACAATGGAACACAGTGCTGTGAGATCATATGTAGGAACAACTGTTCCTGCGACGCCTATGCTCCCATAAATCACATTAACGATACTGGATGCCAGATATGGCTCAAAGGAACCAAATTCGTTACTGCTTCTGGGGATATAGCACTGCCAATCAACGTTTCTGTTGCAGTGCTCCAAAAGGATGAACTGCCACACTTCCCAGTCGACGTTGAACACAAAGTAAACAGGTGGTGGATATGGCTCATCGTTGGGGTGGGAGCAGCTCTTGTAATACCTGTGATATTCTATTTATCGCGTGCCTTGTTAAGAAAATACAAAGCAAAAGTGGAGAGAAAAAAGAGGCAGAAGAAGTTATTACATGACATTGGAGGGAATGCAATGCTTTCAATGGTGTACGGCAAAACCATAAAAAGTAATAACAAGGGAAAGACAAGCAATGAAGTTGAAATATTTGCTTTTGATACCATCGTTGTTGCCACAAACAATTTCTCAGCTGCAAATAAGTTAGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGAACACTAAGTGATCAACAAGAAGTAGCAATAAAGCGACTTTCTAAAAGTTCGGGACAGGGGGTAATAGAGTTTACGAATGAAGCCAAACTCATGGCCAAACTCCAGCACACTAATCTGGTAAAGCTTTTAGGATTCTGCATCCAGAGAGATGAAAGAATATTGGTCTATGAGTACATGTCTAACAAGAGCTTAGACTTCTACCTATTTGATTCGGCTAGAAAGGATTTGCTAGCCTGGGAAAAAAGGTTGAACATCATTGGAGGTATTGCTCAAGGACTTCTTTACCTTCACAAGTATTCAAGACTAAAAGTGATACATCGCGACCTAAAAGCAAGTAATATATTGCTTGATCACGAGATGAATGCTAAAATATCTGACTTTGGCATGGCTCGAATATTTGGTGTAAGAGTATCTGAAGAAAACACAAATAGAGTTGTTGGTACATTTGGATATATGGCTCCAGAGTATGCAATAAAAGGTGTTGTGTCCATCAAAACAGATGTGTTCAGCTTTGGTGTGCTGCTACTAGAGATAGTTAGTGGCATGAAGAATAATAGTCGCTATCATTCGGATCACCCACTCAACCTCATAGGATACGCGTGGCAGCTCTGGAATGAAGGCAGAGCTCCCGAGCTAATAGACCCAACGTTAAATGGATTGTGTTCTCAGAATGAAGTTTTGAGATGTATTCATATCGGCCTCTTGTGTGTACAAGATCAAGCGACAGATAGACCGACAATGGTAGATATTGTTTCATTTCTATCAAATGATACAATCCAACTTCACCAACCAAAGCAACCAGCATTCTTCATCAATGAGGTTGTGGAAGAGTCAGAGCTTCCTTACAGCCAGCAAGAACTTCATTCTTTAAATGACGTAACAATTTCTAGTACTCATGGAAGATAA 2457 0.4233 MSTGVLPTLLFFLILILLLLNPSEPEQIAIYWGQNSNEGNLTETCAPGKYSHVIIAFLSTFGNGQTPQLNLAGHCDPSSNGCTNIGTEIKKCQKQGIKVMLSIGGGTGNYSITSDEEAQNVSDFLWNNFLGGFSSSRPFGDAVLDGVDFDIELGDNTSFMGNLAQYLKANSNLYLSAAPQCPFPDAKLGSAIGTGLFDYVWVQFYNNPSCHYTQNNVDSFLKSWSEWATSLKGGELFLGLPADQAAAPGGGYVPPDVLMSQILPAIKVSTIYGGVMLWSRYYDKMSGYSTRIQNLQINGTANPLCTRKSPACRSHEGGFVERVGNMSTVGIKVYEDDNNGTQCCEIICRNNCSCDAYAPINHINDTGCQIWLKGTKFVTASGDIALPINVSVAVLQKDELPHFPVDVEHKVNRWWIWLIVGVGAALVIPVIFYLSRALLRKYKAKVERKKRQKKLLHDIGGNAMLSMVYGKTIKSNNKGKTSNEVEIFAFDTIVVATNNFSAANKLGEGGFGPVYKGTLSDQQEVAIKRLSKSSGQGVIEFTNEAKLMAKLQHTNLVKLLGFCIQRDERILVYEYMSNKSLDFYLFDSARKDLLAWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKASNILLDHEMNAKISDFGMARIFGVRVSEENTNRVVGTFGYMAPEYAIKGVVSIKTDVFSFGVLLLEIVSGMKNNSRYHSDHPLNLIGYAWQLWNEGRAPELIDPTLNGLCSQNEVLRCIHIGLLCVQDQATDRPTMVDIVSFLSNDTIQLHQPKQPAFFINEVVEESELPYSQQELHSLNDVTISSTHGR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04236 818 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Pumo4g04236 818 SUPERFAMILY Protein kinase-like (PK-like) 483 795 IPR011009 -
Pumo4g04236 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Pumo4g04236 818 CDD STKc_IRAK 506 771 - -
Pumo4g04236 818 Gene3D Glycosidases 26 295 - -
Pumo4g04236 818 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Pumo4g04236 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 575 - -
Pumo4g04236 818 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Pumo4g04236 818 ProSiteProfiles Protein kinase domain profile. 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04236 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Pumo4g04236 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 295 - -
Pumo4g04236 818 SUPERFAMILY (Trans)glycosidases 23 292 IPR017853 -
Pumo4g04236 818 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04236 818 CDD GH18_hevamine_XipI_class_III 27 294 IPR045321 -
Pumo4g04236 818 Pfam Glycosyl hydrolases family 18 28 283 IPR001223 GO:0005975
Pumo4g04236 818 Pfam PAN-like domain 326 373 IPR003609 -
Pumo4g04236 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 301 796 - -
Pumo4g04236 818 Gene3D Transferase(Phosphotransferase) domain 1 576 786 - -
Pumo4g04236 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Pumo4g04236 818 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 299 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04236 Pumo-Chr4 83305740 83308945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04236 468 788 Receptor kinase-like Gene Family AT4G23150 56.075 2.63e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo4g04236 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04236 - - gmx:100794508 1407.12