LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g04235	ATGGAATTTTGGCCAGAATTTCTTGCAAGCAGCACGGGTAAAGAGTTTGTGGCTGGAGGGTTTGGAGGCACTGCTGGTATAATCTCAATTTACCCATTAGACACGCTCCGTGTCATACAACAGAACTCAAACAATGGCTCTGCCTTCACCATCCTTAGAAATGTGGTGGCCAAGGAAGGACCGACTGCTCTCTACCGTGGAATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGGGGCAAAGAGAGGTTGAGGAACAAGAGGAAGGTGTGGTAATGGAATTTTGGCCAGAATTTCTTGCAAGCAGCACGGGTAAAGAGTTTGTGGCTGGAGGGTTTGGAGGCACTGCTGGTATAATCTCAGGTTACCCATTAGACACGCTCCGTGTCATACAACAGAACTCCAACACTGGCTCTGCCTTCACCATCCTTAGAAATGTGGTGGCCAAGGAAGGACCAACTGCTCTCTACCGTGGCATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGAACGCTATGGTTTTCCAAATTTACGCAGTTCTCTCGAGGGCATTTAGTTCATCCGTTTCTGTTAACGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGAGGATTTTGCTCTGGCGCTTTGCAGAGTATGTTGCTCTCCCCTGTTGAGTTAGTTAAAATTCGCCTTCAGCTTCAGAACACAGGCCAATCCACAGAACCCCAAAAGGGTCCCATAAGGGTCGCCAAGAACATTTGGAAAAGAGAGGGTCTTCGTGGCATTTACCGAGGACTTGGCATCACTATGCTAAGAGACGCACCTGCACATGGCCTCTACTTTTGGACATATGAATACGCGAGGGAGAAACTTCACCCAGGTTGTAGAAAAAGTTGTGAAGAGAGCTTGAATACTATGTTGGTATCAGGAGGATTGGCCGGGGTTGTGAGTTGGGTTTTCAGCTACCCTTTAGACGTTATAAAGACGAGGTTGCAGGCTCAGACACTTTCTTCACGGAAATACAAAGGCATTTTGGATTGTCTTCGAAAGAGCGTTGAAGAGGAAGGGTACGTTGTGCTGTGGCGGGGTTTAGGAACTGCGGTTGCTAGAGCTTTTGTAGTGAACGGTGCTATATTTTCTGCTTATGAGATCACTCTTAGGTGTCTGTTTGACAAATAA	1158	0.4758	MEFWPEFLASSTGKEFVAGGFGGTAGIISIYPLDTLRVIQQNSNNGSAFTILRNVVAKEGPTALYRGMAAPLASVTFQGQREVEEQEEGVVMEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVIQQNSNTGSAFTILRNVVAKEGPTALYRGMAAPLASVTFQNAMVFQIYAVLSRAFSSSVSVNDPPSYKGVALGGFCSGALQSMLLSPVELVKIRLQLQNTGQSTEPQKGPIRVAKNIWKREGLRGIYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRKSCEESLNTMLVSGGLAGVVSWVFSYPLDVIKTRLQAQTLSSRKYKGILDCLRKSVEEEGYVVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g04235	385	Pfam	Mitochondrial carrier protein	11	76	IPR018108	-
	Pumo4g04235	385	Pfam	Mitochondrial carrier protein	200	284	IPR018108	-
	Pumo4g04235	385	Pfam	Mitochondrial carrier protein	102	186	IPR018108	-
	Pumo4g04235	385	Pfam	Mitochondrial carrier protein	299	384	IPR018108	-
	Pumo4g04235	385	FunFam	Mitochondrial arginine transporter BAC2	102	385	-	-
	Pumo4g04235	385	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	194	283	IPR018108	-
	Pumo4g04235	385	Gene3D	Mitochondrial carrier domain	97	385	IPR023395	-
	Pumo4g04235	385	Gene3D	Mitochondrial carrier domain	2	80	IPR023395	-
	Pumo4g04235	385	SUPERFAMILY	Mitochondrial carrier	103	376	IPR023395	-
	Pumo4g04235	385	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	101	183	IPR018108	-
	Pumo4g04235	385	SUPERFAMILY	Mitochondrial carrier	13	78	IPR023395	-
	Pumo4g04235	385	PRINTS	Mitochondrial carrier protein signature	303	325	IPR002067	GO:0055085
	Pumo4g04235	385	PRINTS	Mitochondrial carrier protein signature	256	274	IPR002067	GO:0055085
	Pumo4g04235	385	PRINTS	Mitochondrial carrier protein signature	119	133	IPR002067	GO:0055085
	Pumo4g04235	385	PRINTS	Mitochondrial carrier protein signature	209	227	IPR002067	GO:0055085
	Pumo4g04235	385	PRINTS	Mitochondrial carrier protein signature	106	119	IPR002067	GO:0055085
	Pumo4g04235	385	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	10	92	IPR018108	-
	Pumo4g04235	385	PANTHER	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	10	78	-	-
	Pumo4g04235	385	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	294	381	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g04235	Pumo-Chr4	83294164	83302081	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g04235	92	385	Antiporters	AT1G79900	71.186	8.12e-144	408

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g04235	K15109		-	gmx:100812034	563.918