Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04222 ATGGGCGCCGACATGTCCAACAATAATCCTCCTCCCACTTCTCACGCCAAAGACTTCTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCGGCATGCTGGGGTGGCCGCGGCGGATGAGGCTGCCACTTCTAACATGGAGGTGGAGGAGGGGGAAGAAGGGAGTGGAGGAGCTGAGAGGTTAGAGGAGATTAGCAGCGAGAACTCCGGCCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACATGATGATGATGATGCTGATGGGGACAAGAACAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGACCAGATAAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAGACCTTACGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACTGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCAGGGTCAACGTCCCCTTCATGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGACAAGTCAAGGATAATGGATATAGTAAACCAAGCAATGGAGGAGCTCATCAAGATGGCTACCATGGGGGAACCATTATGGCTTCGCAGCTTCGAGACTGGCCGCGAAATACTTAACTATGATGAATATGTGAAGGAATTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACAGTGGAGTTGTTTTTGTGGATCTCCCTCGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTAATATGCAATGGAGAAGGTCCTAACAAGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCTATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAGCAGTTGAGTGCTGAACAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCGTCCGGTTGCATTATTGAGGACAAGTCCAATGGCCATTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATTCAATGTATCGCACCATTGTGAACAGTGGCCTAGCCTTTGGGGCTAGGCATTGGATTGCGACACTACAACTTCAGTGCGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACGTTGGCCGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCGTCTAGCTTCCACACATGGACTAAGGTTACAAGTAAAACTGGGGAAGACATTAGGATAAGTTCTAGAAAGAACTTAAACGATCCTGGGGAACCTCTTGGGTTGATATTGTGCGCTGTTTGTTCTGTATGGTTGCCTGTCTCACCTAATGTTCTGTTTGATTTCTTGAGGGATGAAACACGCCGAACTGAGTGGGACATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACCGAGGCAATGCTGTATCCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATACTGCAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTGCTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCCATACTGCCCTCGGGATTCTCTATTATTCCTGATGGTCTTGAGTCAAGGCCATTGGTGATTTCTTCAAGGCAGGAAGAAAAAAATACAGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTTACCAATGCTTCTCCCACAGCCAAGTTAACAATGGAGTCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGGTTAG 2274 0.4529 MGADMSNNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAAADEAATSNMEVEEGEEGSGGAERLEEISSENSGPTRSRSEDDFEGEGEHDDDDADGDKNKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPNCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDSGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNKNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSPNVLFDFLRDETRRTEWDIMSSGGTVQSIANLAKGQDRGNAVSIQTIKLKENSVWILQDSCTNPYESMVVYASVDIAGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVISSRQEEKNTEGGSLFTMAFQILTNASPTAKLTMESVDSVNTLVSCTLRNIRTSLQCEDG 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04222 757 Gene3D - 90 174 - -
Pumo4g04222 757 FunFam Homeobox-leucine zipper protein GLABRA 2 272 495 - -
Pumo4g04222 757 CDD homeodomain 108 159 IPR001356 GO:0003677
Pumo4g04222 757 CDD START_ArGLABRA2_like 267 495 - -
Pumo4g04222 757 MobiDBLite consensus disorder prediction 41 114 - -
Pumo4g04222 757 SMART HOX_1 103 165 IPR001356 GO:0003677
Pumo4g04222 757 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Pumo4g04222 757 Coils Coil 211 231 - -
Pumo4g04222 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 100 752 IPR042160 -
Pumo4g04222 757 ProSiteProfiles START domain profile. 263 499 IPR002913 GO:0008289
Pumo4g04222 757 Coils Coil 160 190 - -
Pumo4g04222 757 SMART START_1 272 496 IPR002913 GO:0008289
Pumo4g04222 757 Gene3D - 305 491 IPR023393 -
Pumo4g04222 757 SUPERFAMILY Bet v1-like 265 496 - -
Pumo4g04222 757 SUPERFAMILY Bet v1-like 526 742 - -
Pumo4g04222 757 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Pumo4g04222 757 Pfam Homeodomain 104 159 IPR001356 GO:0003677
Pumo4g04222 757 Pfam START domain 274 496 IPR002913 GO:0008289
Pumo4g04222 757 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Pumo4g04222 757 FunFam Homeobox-leucine zipper protein HDG1 88 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04222 Pumo-Chr4 83111016 83117544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04222 67 756 Homeobox Transcription Factor Family AT1G79840 67.379 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g04222 START 1.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04222 K09338 - gmx:100809926 1381.31