Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04216 ATGATGACTGGGAACCCTAACTGGTGGAGCATGCATCCACATCCACCATCTTTGATCCCTCCCCAATATGTGCTTCCACCTTCTTCAATTCCTTTTAATCTTTTAACTGAAAATCCAGAGCCTCCTCAGTCATGGAGCCAACTGCTTTTTACTGGATTACCAGGAGAAGAAGAGAAACTTGGTTTCAGTCATTTTCAGCCTAAAAAGTTGGAAAACTGGGATATCCAGAATTTTAATACTACTGCTTCTAGAGTTCCTATTCTTGATGTAATAAAGCAAGAAGTTTCTCCAAGGGCCAATTTGTACGACCATGGGGGGCGTGAGGAATTTCAAGCTTCTACTGGCTCTTCTTGGTCACATATGGTGCCTGTTTCTTCCCCCGGCTCTTGCGTCACTAGCTTGAGTAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAAATCATAGGAAAAATCTACTACAAGACCAAATATCTGAGTGTAATAGCACCACTGTTGGAGTTTGTAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTCAAGGTGCGGAAGGAGAAGCTAGGTGATAGAATAACAACCCTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGCTCTCCTTACTTGGACAATGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTTTTTCCAGAGGACCCCGGTCAGCTGTTGAATGACAATAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGGAGAAGATAAAACAAAGGATTTGAGGAGTAGAGGGTTGTGCCTGGTTCCGGTGTCTTGTACGCAGTATGTTGGAAGCGAAAATGGGGCCGATTACTGGGCACCCGCATTCGGAATTAATTAA 963 0.432 MMTGNPNWWSMHPHPPSLIPPQYVLPPSSIPFNLLTENPEPPQSWSQLLFTGLPGEEEKLGFSHFQPKKLENWDIQNFNTTASRVPILDVIKQEVSPRANLYDHGGREEFQASTGSSWSHMVPVSSPGSCVTSLSSSNNILDFTYNKSNHRKNLLQDQISECNSTTVGVCKKARVQPSSSQAPLKVRKEKLGDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDNASKNMRNQQSVHGERNSVFPEDPGQLLNDNNGLKRKGAPNQDGEDKTKDLRSRGLCLVPVSCTQYVGSENGADYWAPAFGIN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04216 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 303 - -
Pumo4g04216 320 Gene3D - 184 250 IPR036638 GO:0046983
Pumo4g04216 320 MobiDBLite consensus disorder prediction 243 287 - -
Pumo4g04216 320 FunFam Transcription factor bHLH123 family 185 248 - -
Pumo4g04216 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Pumo4g04216 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Pumo4g04216 320 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04216 Pumo-Chr4 83052944 83056185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04216 1 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.130 2.97e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04216 - - gmx:100783401 490.73