Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04215 ATGTCTAGAGCATTGGAACATGATTACATAGGGTTGGCAGAGAATCCGTCAATGGACGGAAGCTCTGACCAACTATCTTCTTCTTCTTCTGAGGATGGTAAAGCCTCATCACTCAACTTGAAGGAGACAGAACTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCCAGAGAGAAAATCAGGTTCTGCGCTCTGTCTTTTCGGCAAAGAGTTGCAGAACAATAACAATGTTTGTTCAGTTGCAAGCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACCTCTTCTGGGAAATGGGGTTCCTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCTAGAGGGGCCAATGTTGGGAAACCTCTTATTGGTTTAGACACTCAAACTAACACCACCATCAAAGAGGTTGCTGCAGTTCCTCAATCTGCTAAGCCGGTTCAGGAAAACAATGATCAGGTTGTTGCAACAAATGGCCATGCCACTGCTCCTGCTGCAAAGGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTCCGAAAGAACACGATGGCCTCTAATTTAACAAAGAACAATGATGAAGCCGAGGGAAAATCTGGATTTGGTTGTCTCTATGTTAAAGTCAGTATGGATGGTGCCCCATATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTATATGGAACTTTCCTCTGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTGA 984 0.4533 MSRALEHDYIGLAENPSMDGSSDQLSSSSSEDGKASSLNLKETELRLGLPGCESPERKSGSALCLFGKELQNNNNVCSVASPLKAGAKRGFSDAIDTSSGKWGSSVTDGSQGAALFSPRGANVGKPLIGLDTQTNTTIKEVAAVPQSAKPVQENNDQVVATNGHATAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04215 327 MobiDBLite consensus disorder prediction 17 36 - -
Pumo4g04215 327 Pfam AUX/IAA family 42 318 IPR033389 -
Pumo4g04215 327 ProSiteProfiles PB1 domain profile. 207 309 IPR000270 GO:0005515
Pumo4g04215 327 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 314 IPR003311 GO:0005634|GO:0006355
Pumo4g04215 327 SUPERFAMILY CAD & PB1 domains 207 308 - -
Pumo4g04215 327 Gene3D - 202 321 - -
Pumo4g04215 327 FunFam Auxin-responsive protein 202 319 - -
Pumo4g04215 327 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04215 Pumo-Chr4 83029827 83032776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04215 209 321 B3 DNA Binding Superfamily AT1G19850 32.174 3.79e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo4g04215 AUX_IAA 7.6e-93 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04215 K14484 - gmx:100804423 568.54