Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04209 ATGGCTGGCATAGCATTCGGACGCTTCGATGATTCTTTCAGTTTGGCCTCCATCAAGGCCTACATTGCTGAGTTCATCTCAACCCTTCTCTTTGTTTTTGCTGGTGTTGGCTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTAGCTGTTGCTATTTGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGCCATGTCAACCCTGCTGTGACCTTTGGCTTGGCTCTTGGGGGCCACATCACCATCCTCACTGGTCTCTTCTACTGGATTGCACAGCTTCTTGGATCCATAGTCGCATCCTTACTCCTCAAGTTTGTCACTGGCTATGACACTCCTATCCACAGTGTTGCTGCGGGAGTTGGAGCTGGTGAAGGAGTTGTTACTGAGATAATCATCACATTTGGATTAGTGTACACTGTGTATGCCACAGCAGCAGACCCTAAGAAGGGTTCATTGGGCACAATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCTGGCGGGTCCATGAACCCTGCACGCTCCTTTGGCCCTGCTGTTGTCAGTGGTGACTTTCATGACAACTGGATCTACTGGGTTGGCCCTCTTATTGGTGGTGGTTTGGCTGGTCTTATCTATACCTATGCCTTCATCCCCACCCAGCATGCACCTCTCGCTAGTGATTTTTGA 744 0.496 MAGIAFGRFDDSFSLASIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVASLLLKFVTGYDTPIHSVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYTYAFIPTQHAPLASDF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04209 247 PANTHER AQUAPORIN-8 4 240 IPR034294 -
Pumo4g04209 247 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Pumo4g04209 247 NCBIfam MIP family channel protein 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 FunFam Probable aquaporin TIP1-1 2 247 - -
Pumo4g04209 247 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo4g04209 247 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04209 Pumo-Chr4 82998076 83000244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04209 1 247 Major Intrinsic Protein MIP AT3G16240 80.400 9.13e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04209 K09873 - gmx:100817754 457.218