Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04204 ATGACCCAAACAACAAGGTGCCACGAAACTCCTAGCAGCAGCATCAGCAACTCCTCCGCATCAAAAGAACCCCAGAAAACAGAGGCCACAAAACAGAGCAAGGCAAAGAGAAACAGAGACCCCACCAAGCATCCCGTTTACCACGGCGTGCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGTAAGAAATCACGCATCTGGCTCGGAACTTTTGCAACGCCTGAAATGGCAGCACGTGCGCACGATGTTGCGGCTTTGAGCATTAAGGGCCACACAGCGATTCTCAATTTTCCAAACATAGTAAACATGCTTCCCAGACCCGTCACGTGCACCCCACGTGACATCCAAGCGGCGGCCGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGGGAGAGCTCGGAGGCGGAGTCGTCGGAGCTGAGCGAGATTGTGGAGCTGCCGAACATAGAAGAGAGCTTCGACTCGGTTGAGTCGAGAAGTGAGTTCGCATTGATCGACTCGGTGGATAGTTGGGTGTACCCTCCTCCAATGGCAGTGGGGAGCATTTGTGAGATGATGCTGCTTGGGGAACACGAGTGTGGATTATTCCAATTTGGGACCGATCACCAAAAAACATGTTCAGTTTAG 642 0.5358 MTQTTRCHETPSSSISNSSASKEPQKTEATKQSKAKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAILNFPNIVNMLPRPVTCTPRDIQAAAAEAAAMVEFDRESSEAESSELSEIVELPNIEESFDSVESRSEFALIDSVDSWVYPPPMAVGSICEMMLLGEHECGLFQFGTDHQKTCSV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04204 213 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Pumo4g04204 213 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pumo4g04204 213 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Pumo4g04204 213 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g04204 213 MobiDBLite consensus disorder prediction 1 47 - -
Pumo4g04204 213 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Pumo4g04204 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 157 - -
Pumo4g04204 213 CDD AP2 47 104 IPR001471 GO:0003700|GO:0006355
Pumo4g04204 213 Pfam AP2 domain 45 96 IPR001471 GO:0003700|GO:0006355
Pumo4g04204 213 MobiDBLite consensus disorder prediction 27 47 - -
Pumo4g04204 213 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pumo4g04204 213 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Pumo4g04204 213 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04204 Pumo-Chr4 82977371 82978493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04204 12 186 AP2-EREBP Transcription Factor Family AT5G11590 52.736 8.74e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g04204 AP2 7.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04204 K09286 - gmx:100787471 375.555