Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04199 ATGGCAATGTCCTGCAAGGATGGTAAAATAGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATTCTCTCTAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGGCTGCAAGCTGTAAATAGGAAGCTCACAGCTATGAACAAGCTGCTCATGGAGGAGAATGATAGATTGCAGAAGCAGGTGTCTCAACTGGTCTACGAAAATGGCTACTTTCGCCAACATACCCAAAATACTGCGCTTCCAACCAAAGACACAAGCTGTGAGTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCGTGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACGTTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGGAGCCTAGTGATCTGTGAGAGGTCGCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCCAGTGGGTACCTGATAAGACCCTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTTCCCGAAGTACTGCGTCCACTGTATGAATCATCAACAGTGTTGGCTCAGAAGACAACGATGGTGGCCCTACGTCAACTAAGGCAGATTTCGCATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGGAGACGACCGGCAGCTCTTCGAGCACTTGGCCAGAGACTCAGCCGTGGCTTCAATGAGGCAGTCAATGGGTTCACTGATGAGGGATGGACAATGATTGCCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCAAATGGATTTCCATCTGTCAGCAATGCAGTCTTATGTGCCAAAGCCTCAATGCTATTACAGAATGTGCCTCCAGCCATTCTACTAAGGTTTCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTGGTTTACCGGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATTGAGCATGAGGAGTTTCTGGAAGTTATTAAGTTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAATGCCCTGA 1632 0.4798 MAMSCKDGKIGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTTQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAVNGFTDEGWTMIANDGVDDVTVLVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04199 543 CDD bZIP 68 107 - -
Pumo4g04199 543 Gene3D - 194 372 IPR023393 -
Pumo4g04199 543 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Pumo4g04199 543 Coils Coil 71 112 - -
Pumo4g04199 543 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Pumo4g04199 543 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Pumo4g04199 543 SMART HOX_1 13 79 IPR001356 GO:0003677
Pumo4g04199 543 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Pumo4g04199 543 Gene3D - 12 82 - -
Pumo4g04199 543 Pfam START domain 160 368 IPR002913 GO:0008289
Pumo4g04199 543 SUPERFAMILY Bet v1-like 159 348 - -
Pumo4g04199 543 CDD START_ArGLABRA2_like 154 369 - -
Pumo4g04199 543 SMART START_1 159 369 IPR002913 GO:0008289
Pumo4g04199 543 MobiDBLite consensus disorder prediction 126 154 - -
Pumo4g04199 543 CDD homeodomain 16 76 IPR001356 GO:0003677
Pumo4g04199 543 MobiDBLite consensus disorder prediction 126 149 - -
Pumo4g04199 543 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 542 IPR044830 GO:0003700
Pumo4g04199 543 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Pumo4g04199 543 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04199 Pumo-Chr4 82896713 82900538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04199 1 543 Homeobox Transcription Factor Family AT1G52150 87.179 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo4g04199 START 7.2e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04199 K09338 - zju:107428556 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04199 4 82896713 82900538 Pumo4g04199 4 82896713 82900538 ECH
Pumo4g04199 4 82896713 82900538 Pumo7g00256 7 2872917 2881103 PCT