Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04192 ATGTTCTCCTCAACCAGATGCGCTTTCCTGAGCAACTCAGGGTTAGGTGGGTGCAGCAGCTTGGGTGATGTGCAGAAAAAGCGTTCAGCTCCTTTCAGGGTGGTGTGTATGACCCCAAGCAGCAGCAGGTCCGGTGATAGAAACGGCAGCGTTGTGATGGAGACGCCGTTGAAAGAATTGAAAAAGGAATCCACGGTGGCTGACGTGGACGACAACGCCATCTCCGCCGGCGGTCCTCAAGATGTGTACGGCGAGGATAGAGCAACGGAGGATCACTTTGTTACCCCTTGGAGTGTTTCTGTTGCCAGTGGTTATACACTGTTGCGAGATCCCCACTTCAACAAAGGGCTGGCCTTCACTGAAAAAGAGAGGGATGCCCACTACTTGCGTGGTCTGCTCCCCCCATCAGTTATTTCTCAAGACACTCAGGTGAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAACGGCTATTTTACAAACTTCTTATTGATCACGTTGAAGAGTTACTCCCAGTTGTATATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATAGTTGTAACTGATGGAGAACGGATCCTGGGTCTTGGGGATCTTGGTTGTCAGGGGATGGGAATACCTGTGGGAAAACTTTCTTTATATACAGCACTTGGAGGAGTCCGCCCTTCAGCTTGTTTACCCATTACCATTGATGTGGGGACAAACAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTCAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGCATGAATTTATGACAGCAGTCAAGCAAACTTATGGGGAAAAGGTTCTAATTCAGTTTGAAGACTTTGCAAATCACAATGCTTTTGATCTGCTTGAGAAATATAGATCTACACATCTGGTCTTTAATGATGATATTCAGGGAACAGCATCCGTGGTTCTTGCTGGACTAGTTGCAGCTCTGAAATTGGTCGGAGGAAACTTAGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGCAAAGATTCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAAAAATCTTTTAGATGCTGTTAATCAAATTAAGCCAACTGTGTTGATTGGAACATCGGGACAAGGAAGAACTTTTACTAAAGAGGTGGTTGAGGCAATGGCCTCGATTAACAAGAGACCTATTATTCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGCACAGCTGAAGAAGCTTACAAGTGGAGCCAGGGACGTGCCATTTTTGCAAGCGGGAGCCCATTTCCCCCTGTTGAGTATGACGGGAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATATTTCCTGGATTTGGTCTCGGTTTAATAATGTCTGGCACCATTCGAGTGCATGATGACCTGCTTCTGGCTGCCTCTGAGGCTTTGGCTGCACAAGTGAGCCAAGAGAACTTTGATAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCAGCCATAGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGCTTGGCCACTCGCCTACCTCAACCTAAAGATTTGGTGAAGTTTGCAGAGAGCTGCATGTATACCCCATCCTACAGAAGCTACCGCCTCGGTATGAGATCAAGAGTTTGGGATAAGCAAAGTAGAAATGGGTCGGTTTCACACTCATGGTTTTGGACGCGTTGA 2007 0.4609 MFSSTRCAFLSNSGLGGCSSLGDVQKKRSAPFRVVCMTPSSSRSGDRNGSVVMETPLKELKKESTVADVDDNAISAGGPQDVYGEDRATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPSVISQDTQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLLDAVNQIKPTVLIGTSGQGRTFTKEVVEAMASINKRPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSQENFDKGLIYPPFTNIRKISAAIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRSYRLGMRSRVWDKQSRNGSVSHSWFWTR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04192 668 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 489 505 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 PIRSF ME 58 644 IPR001891 GO:0004470|GO:0004471
Pumo4g04192 668 SMART Malic_M_2 359 612 IPR012302 GO:0051287
Pumo4g04192 668 Pfam Malic enzyme, NAD binding domain 359 611 IPR012302 GO:0051287
Pumo4g04192 668 SMART malic_2 168 349 IPR012301 GO:0004471
Pumo4g04192 668 FunFam Malic enzyme 357 643 - -
Pumo4g04192 668 Gene3D - 102 356 IPR037062 GO:0004471
Pumo4g04192 668 CDD NAD_bind_1_malic_enz 359 637 - -
Pumo4g04192 668 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Pumo4g04192 668 PANTHER MALIC ENZYME-RELATED 74 643 - -
Pumo4g04192 668 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Pumo4g04192 668 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Pumo4g04192 668 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 647 IPR036291 -
Pumo4g04192 668 Gene3D - 357 661 - -
Pumo4g04192 668 FunFam Malic enzyme 102 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04192 Pumo-Chr4 82834579 82841316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04192 K00029 - gmx:100791514 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00265 7 3112891 3118463 Pumo4g04192 4 82834579 82841316 ECH
Pumo6g03178 6 74586650 74591294 Pumo4g04192 4 82834579 82841316 ECH
Pumo10g00974 10 12631450 12636376 Pumo4g04192 4 82834579 82841316 ECH
Pumo4g04192 4 82834579 82841316 Pumo4g04192 4 82834579 82841316 ECH
Pumo4g04192 4 82834579 82841316 Pumo10g00974 10 12631450 12636376 ECH
Pumo4g04192 4 82834579 82841316 Pumo7g00265 7 3112891 3118463 PCT