Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04187 ATGAACTGCACCGACACAACTCGCGTTTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACGGTTGAAGGCAATGGCTGGGATTATATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACACTCACTGTGAAATCCAATGGAGGGTTTGAGCATGATTTAGCGATGGAAGCCTATGATGGGCTTGCTCTCTTGCCCAACACGACGCGTTGGGCAAGAAAAGGTGGTGTCATATCTCTGAGCTTGTTCTGTAGTTGCTCCAGTGGACTGTGGAACTATCTGATGAGCTATGTCATCAGAGATGGGGACAGTGTTGAATCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGCCATTGACAATCCTGATAGCCTCACTGTTGGTTCTCTCTATTATATACCTCTGAATTCGGTTCCCGGTGAGCTTTACCACTTGAAGAATGATACTCCTCCAGCTCCAACCCCTTCACCATCTGTTGATAATTTTTCAGCTGACCAAGTCAACCAGAAAGCTCATGTACCCCATGAATGGATCGTAGGAGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAAGCATTATTGTGTGTGTGTCCCTGAGATCACCCAATTGTTTGGTTGAAGCTAGAAATAATGCAAAAGATTCTGCAGGAAAGATCTCTAACAAGTTCTATGTTTTTGGGAATCCAAGTTTATTTTGTGGATGTGGCAAACCTATGGACCAGAAGCAAACTGATGGTGAATCCAGTAGTCACCAAATTACAGTTACCAAAGCATCAACTCTAATACCTGACATGTTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAAATTTTTTCTTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCACAGAACATATGGCTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATAAAAAGAATGACAGCTACTAAAACTAAAGAATTTATGCCAGATATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCATGATGAGTTTTTCCTTATTTATGAATTTGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCAGTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTAGGTAAAACAAATGAGGGAGAAACCGCAACAACCAAAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGAGGCCATTATTCAAACACAAGGCCATGAAAAACGAGCATTGGCATCTATTATGCTGGCAGTTCTTAGGAACTCACCTGATACTGTGAGCATGTCAAGCACGAGAAACCTCGTTGATCCTATTATGATGGATCTGTATCCCCATGATTGTGTATATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGCCCTGATATGAAGCAAGTTGTGGTTTCCCTCTCACAAATCCTCCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGGAACAGCCAGGTATTCAGTGGGCTTGTTCAGGGAAGATAG 1875 0.4245 MNCTDTTRVCTSFLAFKPQPNQTLAVIQSMFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFEHDLAMEAYDGLALLPNTTRWARKGGVISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNAIDNPDSLTVGSLYYIPLNSVPGELYHLKNDTPPAPTPSPSVDNFSADQVNQKAHVPHEWIVGGLGVGLALIILSIIVCVSLRSPNCLVEARNNAKDSAGKISNKFYVFGNPSLFCGCGKPMDQKQTDGESSSHQITVTKASTLIPDMLDMDKPVVFSYEEIFSSTDGFSDSNLLGHRTYGSVYYGLLRDQEVAIKRMTATKTKEFMPDIKVLCKVHHANLVELIGYAASHDEFFLIYEFAQKGSLSSHLHDPQSKGHSPLSWITRVQIAVDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETATTKVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIQTQGHEKRALASIMLAVLRNSPDTVSMSSTRNLVDPIMMDLYPHDCVYKMAMLAKQCVEEDPVLRPDMKQVVVSLSQILLSSVEWEATLAGNSQVFSGLVQGR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04187 624 Pfam LysM domain 124 161 IPR018392 -
Pumo4g04187 624 SMART serkin_6 319 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04187 624 SUPERFAMILY LysM domain 122 167 IPR036779 -
Pumo4g04187 624 SMART LysM_2 123 167 IPR018392 -
Pumo4g04187 624 Gene3D Transferase(Phosphotransferase) domain 1 392 611 - -
Pumo4g04187 624 ProSiteProfiles Protein kinase domain profile. 319 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04187 624 Gene3D Phosphorylase Kinase; domain 1 293 390 - -
Pumo4g04187 624 Gene3D LysM domain 119 174 IPR036779 -
Pumo4g04187 624 FunFam PTI1-like tyrosine-protein kinase 3 391 610 - -
Pumo4g04187 624 ProSiteProfiles LysM domain profile. 122 166 IPR018392 -
Pumo4g04187 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Pumo4g04187 624 SUPERFAMILY Protein kinase-like (PK-like) 295 596 IPR011009 -
Pumo4g04187 624 Pfam Protein tyrosine and serine/threonine kinase 324 595 IPR001245 GO:0004672|GO:0006468
Pumo4g04187 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 47 618 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04187 Pumo-Chr4 82789508 82795473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04187 1 624 Receptor kinase-like Gene Family AT1G51940 63.707 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo4g04187 PK_Tyr_Ser-Thr 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04187 - - gmx:100789067 1142.49