Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04184 ATGGTGGTGATAGAGCAGGAAGAGAGCGAGCATCCAAACGCCAACGCCGGCAACAATGCTTCTGACGGCTTCGAAACCGCCAGCGAAGCCGATCTCGTCAGTGACGGCGACGGCGACGACAGCGGAGCTGACAGCCGGGAAGAACAGAATCACGACGAGAAGCAGCAGCAGCAGACGGAGCAAGAGCCGGAACACGATATTCCTCGTAGCACCGAATCATCGGAGAGTAATGCCATGATCAATGAAGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGATGCAAAGGTAGAAGGAAACAAGCTTTTTGGAGATGGGAAGTATGAAGAGGCGTTATCGCAATATGAACTTGCTCTACAAGTAGCACCAGACATGCCTTCATCTGTGGAAATACGTTCAATATGCCATTCAAACCGTGGTGTGTGCTTTTTGAAACTGGGAAAATATGATAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAAGCTTTGATAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGGCGACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGCAAAACTGAAAGATATGGGCAATTCTGTCCTGGGTCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 798 0.4511 MVVIEQEESEHPNANAGNNASDGFETASEADLVSDGDGDDSGADSREEQNHDEKQQQQTEQEPEHDIPRSTESSESNAMINEEESRQKALDQANDAKVEGNKLFGDGKYEEALSQYELALQVAPDMPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKALIRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04184 265 MobiDBLite consensus disorder prediction 79 94 - -
Pumo4g04184 265 MobiDBLite consensus disorder prediction 39 71 - -
Pumo4g04184 265 ProSiteProfiles TPR repeat profile. 168 201 IPR019734 GO:0005515
Pumo4g04184 265 SMART tpr_5 168 201 IPR019734 GO:0005515
Pumo4g04184 265 SMART tpr_5 93 126 IPR019734 GO:0005515
Pumo4g04184 265 SMART tpr_5 134 167 IPR019734 GO:0005515
Pumo4g04184 265 Pfam Tetratricopeptide repeat 169 201 IPR013105 -
Pumo4g04184 265 Pfam Tetratricopeptide repeat 136 165 IPR001440 GO:0005515
Pumo4g04184 265 Coils Coil 79 99 - -
Pumo4g04184 265 MobiDBLite consensus disorder prediction 11 25 - -
Pumo4g04184 265 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 265 - -
Pumo4g04184 265 ProSiteProfiles TPR repeat profile. 93 126 IPR019734 GO:0005515
Pumo4g04184 265 Gene3D Tetratricopeptide repeat domain 42 231 IPR011990 GO:0005515
Pumo4g04184 265 MobiDBLite consensus disorder prediction 1 94 - -
Pumo4g04184 265 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Pumo4g04184 265 SUPERFAMILY TPR-like 90 211 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04184 Pumo-Chr4 82752531 82755194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04184 58 224 Calmodulin-binding Proteins AT3G25230 34.254 1.07e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04184 K24926 - gmx:100808386 414.846