Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04183 ATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACCACCAGGGTAACAACAAAGCCTCTTCATCTTCATCATTTCTTCAGTTCCCATTCAACCCAACCTGTGATGGGAAAAGATGCATCACAGAACTGTTGCCCTAAGGTGGTAAAGTTGCAGAATGGTGGTGGTGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGTGCTTCTAAGCCACCTCCTGAATCTCAGCCTGAGCAGCATAACAAGGTTTCTGGTAAAAAACCTGTTGACAACTATGCTAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAATCTCTCATCTGCTGTGGATGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGCTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAAGACAAGATACCAGTTGA 762 0.4619 MGSKARPLHGQTTTTRVTTKPLHLHHFFSSHSTQPVMGKDASQNCCPKVVKLQNGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPPPESQPEQHNKVSGKKPVDNYANKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQRQDTS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04183 253 Gene3D - 127 247 - -
Pumo4g04183 253 MobiDBLite consensus disorder prediction 58 82 - -
Pumo4g04183 253 SUPERFAMILY CAD & PB1 domains 124 233 - -
Pumo4g04183 253 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g04183 253 MobiDBLite consensus disorder prediction 57 125 - -
Pumo4g04183 253 Pfam AUX/IAA family 67 241 IPR033389 -
Pumo4g04183 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 239 IPR003311 GO:0005634|GO:0006355
Pumo4g04183 253 ProSiteProfiles PB1 domain profile. 132 236 IPR000270 GO:0005515
Pumo4g04183 253 MobiDBLite consensus disorder prediction 96 115 - -
Pumo4g04183 253 FunFam Auxin-responsive protein 127 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04183 Pumo-Chr4 82730380 82734556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04183 136 249 B3 DNA Binding Superfamily AT4G23980 34.211 1.61e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo4g04183 AUX_IAA 2.8e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04183 K14484 - gmx:100799244 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00271 7 3216866 3220265 Pumo4g04183 4 82730380 82734556 ECH
Pumo4g04183 4 82730380 82734556 Pumo4g04183 4 82730380 82734556 ECH
Pumo4g04183 4 82730380 82734556 Pumo7g00271 7 3216866 3220265 PCT