Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04182 ATGTCAGCTCAAGCAACATGGCTCTCAAAAACACATCTAGAAACATCAAATACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATTTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAAGTTAATGATATCAAAGATTTCCTGGATGATTATGTAGAGCGCAATCAGGGAGAAGATGAATTGCAACTTGCACAACTAGAGGCCACGAGGCTCTTTATTAAAGAGACGGAACAAAATCATAGGTTACAAGAACTCTTACGGAGAGTTGGAGAGGACGAACAGATTGAGGCTGTTAACAACATGATTCTTGAAGCCTTCAATAGGCGGAGGGACCCCGTGGGGGGTTCTATGGCCGTGATCAACCAACTCAGAGTTCAATGCGATGCCATTGCAGCTGAAAGAGATGCCATTGCAGCTGAAAGGAACCACATTGCGGTTGCCGCCGCGGCCGGTGCGGCGGTACTGCCTTACAAAAAGAGACGGGCAGGCCATGCATTTTCTCTCTGCTTTGACAGGCCAAAAAAACAAGCAATGCAGTTACTTGAATCACCTATCTGCACCATTCAAGAATCAGAAGCCCTTCAATCACCTTCTGGAGTTCCTGATAGTATTACACTTCCACCTTACAAGGCATCTTCTAGAATTCCAGGAAGTATTGCACTTTCACCTTCCAAATCATTCCCCAAAATGAAGTGGATTTACAGCTCTATGGACTCTCCAATATCACACCATAAGCATCACCGTTCCAGAAGAAAGTCCAACAACAAGTTACTGGACCAACCTATCCAATCCACCCTCATACTCACCAAGGGTCCTGCATATGTTGGCACAAAGTGTGTATTTAGGAGGCAGGCTTTATATGGCTACAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAAAAACAGCCGTGAGGATGTTCTTCAATGCAGTCATTACATGACTATAGTCATTCCTGATGGAAAGCCTCTGCTATTGCCATGGAAACAGTATAAATGTATACCTGCAATTATAGTTTGA 1032 0.438 MSAQATWLSKTHLETSNTRHKAHIKKCEFILRLLDNDELSPEQVNDIKDFLDDYVERNQGEDELQLAQLEATRLFIKETEQNHRLQELLRRVGEDEQIEAVNNMILEAFNRRRDPVGGSMAVINQLRVQCDAIAAERDAIAAERNHIAVAAAAGAAVLPYKKRRAGHAFSLCFDRPKKQAMQLLESPICTIQESEALQSPSGVPDSITLPPYKASSRIPGSIALSPSKSFPKMKWIYSSMDSPISHHKHHRSRRKSNNKLLDQPIQSTLILTKGPAYVGTKCVFRRQALYGYNPPKGPKRPKMVKNSREDVLQCSHYMTIVIPDGKPLLLPWKQYKCIPAIIV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04182 343 Pfam Lateral organ boundaries (LOB) domain 83 138 IPR004883 -
Pumo4g04182 343 Pfam Not1 N-terminal domain, CCR4-Not complex component 9 63 IPR007207 GO:0005634|GO:0006355
Pumo4g04182 343 Pfam Cellulose synthase 269 305 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04182 Pumo-Chr4 82722850 82728836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04182 273 304 Cell Wall Biosynthesis AT5G17420 81.250 3.26e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g04182 Cellulose_synt 2.3e-08 CL0110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04182 K12580 - gmx:100819202 100.908