Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04180 ATGGGCAAAGCTACAAGGTGGTTGAAGGGGTTGTTAGGAAAGAAGAAAGAGAAGGACTACTGTGGCAATTCGGGCTCATTGGATCTTGACAAGAGTGAAAAGAAACGATCAGAGAAGTATGAAGTGAGTCACATTACTTCTACCAGTGTTACCGCCTTTGATCGTACTAGGCTCAGATCCTACGTTGCCAAAAAAGAGAATGTGAAGAACAAACACTCCATTGATGTGGCTGTTGTGAGATCAAAAAGCTGTGACAGAGGCACCTTGCTTATTGGAAGCAGGGAGGGCTGGGCTGCTGTGTTGATTCAATCCTTTTTCAGAGGTTATTTGGCGCGAAAGGCTCTCAGAGCACTCAAGGGATTAGTTAAGATACAGGCTCTTGTTAGAGGTTATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTTACAGTGTGCAAGCTATGATAAGAGCCCAAGCTGTTGCTCGATCACTGCGAGCTCGTCATTCCATGGACAAGGAGAATAGATTTCATCCACAAACTCCTTCCAGAAAATATGTGCAACGGTTTGATGAAACAAGAAATTATCAATTACACAACAGAAGGCTACCCATATTCTGCAAGGCATCATTGAATGGATTTGATGAGAGTCCAAAAGTTGTTGAGGTTGACACCCACATGCTACATTCAAGATGTAGGAGCATTAACACTGCAATGTCAGAATGTGGAGAAGACCTGCACTATCAAGCAATGTCATCCTCTCTTCGTTGTCCAGTTCAAGGTCGAATCTCACTTCATGAGAGGCAGCACCCTCAAGAGTTTGATTGGCTCTTCAATGTTGATGAAGGTAACAAGTTCTCCACAGCACACAACACGCCTCGTTTACCAAAATGTATGCTACCAAATGCCCCAGGTACTCCAGTGAAGAGTGTTTGTGGAGAAACCTTGTTTAGGCCTTGCTCCAATTTCCCTAACTACATGACCAATACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGGCCTGAACTCAAGCAAAGGCTTTCAATCAATGAAATGATGGCAGCAAGAAATAGTGTTAGTGGTGTTAGAATGCAGTGGTCATCATCCAACCCAAGAACTCAGGATTACTGTTTTTTTGAAAGGGTTATTTAG 1146 0.4337 MGKATRWLKGLLGKKKEKDYCGNSGSLDLDKSEKKRSEKYEVSHITSTSVTAFDRTRLRSYVAKKENVKNKHSIDVAVVRSKSCDRGTLLIGSREGWAAVLIQSFFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLYSVQAMIRAQAVARSLRARHSMDKENRFHPQTPSRKYVQRFDETRNYQLHNRRLPIFCKASLNGFDESPKVVEVDTHMLHSRCRSINTAMSECGEDLHYQAMSSSLRCPVQGRISLHERQHPQEFDWLFNVDEGNKFSTAHNTPRLPKCMLPNAPGTPVKSVCGETLFRPCSNFPNYMTNTHSSKAKLRSHSAPKQRPELKQRLSINEMMAARNSVSGVRMQWSSSNPRTQDYCFFERVI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04180 381 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Pumo4g04180 381 PANTHER IQ-DOMAIN 5-RELATED 1 355 - -
Pumo4g04180 381 Pfam IQ calmodulin-binding motif 122 136 IPR000048 GO:0005515
Pumo4g04180 381 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
Pumo4g04180 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 138 IPR027417 -
Pumo4g04180 381 ProSiteProfiles IQ motif profile. 98 123 IPR000048 GO:0005515
Pumo4g04180 381 Pfam Protein of unknown function (DUF4005) 277 359 IPR025064 -
Pumo4g04180 381 Gene3D - 55 121 - -
Pumo4g04180 381 SMART iq_5 117 138 IPR000048 GO:0005515
Pumo4g04180 381 SMART iq_5 94 116 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04180 Pumo-Chr4 82681429 82683124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04180 1 362 IQD Protein Family AT3G16490 42.289 1.29e-80 250
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04180 4 82681429 82683124 Pumo4g04180 4 82681429 82683124 ECH
Pumo4g04180 4 82681429 82683124 Pumo7g00274 7 3243442 3246118 PCT