Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04170 ATGGACGAGGAAGCGGAATCTGCTCTAAACCCTACCACAACAGGGTCAAGACACAAATGCTCGGCATGCTATAAGCAATATAAGAAGAAAGAACATCTTATTGAGCACATGAAAACCTCGCATCATTCTGTTCATCAGCCAAGATGTGGGGTTTGTCGAAAGCACTGTAAATCTTTTGAGTCTCTGAGGGAACATCTTACCGGTCCTTTGCCGAGAGGAAATTGTTCAAAGATTTTCTCTCAACAGGGTTGTCAACTTTGTCTGGCACTATTTGATAGTCCTGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTCGTCCAGAAACAAGTGCATTGCCCTATATAGATTCCCAATTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGCGGGGGCCCTGGAGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAAATTAATCTTCCATACATATGTACAGCCTCAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAGAAATGCCATGCCACTTAAGGAAGTTCGAGAAAAGGTACTGCAAATTCTATATAATGGAGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACTCGAACATATGTCGGTTATGATATCCAATCCGGCACTCATGATCCGTATGAAGATTGCATTTCTGTCATGAGACTATACAAGAGAATACGATCTCAAATTCATCCAGAGGAAGGCCATGGAACAACGACTCTGAGTAACAACATTGCTGGCATGCCTGATAGCTGGATATCCAGGGAACTTGACAACCTCACACCCGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGCTTGGATTTGAGGCCAAGATTGACACCCTGA 1110 0.427 MDEEAESALNPTTTGSRHKCSACYKQYKKKEHLIEHMKTSHHSVHQPRCGVCRKHCKSFESLREHLTGPLPRGNCSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTRPETSALPYIDSQFDCQDSSDENHAGGGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDEKLIFHTYVQPQIPVTNYRYDITGLTEEHLRNAMPLKEVREKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYVGYDIQSGTHDPYEDCISVMRLYKRIRSQIHPEEGHGTTTLSNNIAGMPDSWISRELDNLTPDELYAMSRSDYKCWCLDLRPRLTP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04170 369 CDD REX4_like 145 307 IPR037431 GO:0006364|GO:0008408
Pumo4g04170 369 Gene3D - 140 320 IPR036397 GO:0003676
Pumo4g04170 369 FunFam RNA exonuclease 4 isoform A 140 322 - -
Pumo4g04170 369 ProSitePatterns Zinc finger C2H2 type domain signature. 20 42 IPR013087 -
Pumo4g04170 369 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 21 310 IPR047021 GO:0004527
Pumo4g04170 369 Gene3D Classic Zinc Finger 1 68 - -
Pumo4g04170 369 SUPERFAMILY Ribonuclease H-like 143 310 IPR012337 -
Pumo4g04170 369 SMART exoiiiendus 141 315 IPR013520 -
Pumo4g04170 369 Pfam Exonuclease 143 306 IPR013520 -
Pumo4g04170 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 47 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04170 Pumo-Chr4 82365858 82370746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04170 17 362 C2H2 Transcription Factor Family AT3G27970 51.734 2.78e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04170 K18327 - gmx:100788682 708.368