Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04168 ATGGAGGAAAAGCCTAAGCTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCGTTTCCCTTCACTTGTGTATGTACAAATGGAAAGCCTGCTTATGTGACCATCAACATAGACAAGAAGAAGGTGGCGAAAACGACCCAAGAACATGAACGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGAAGACTCAGCTATCACAATTACACTGAAAACGTCATGCTCCATTTTGGGGAAATTCCATATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGTTTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAATCCACAACTAAAATTAAGATTCATGTTATGGTTCAAGCCAGCAGATATGGAACCAAGTTGGACAAAGCTACTAAGCAATGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGCCAGGTTAAGCTCTATCATGATGCTCACCATTCCTCTACTTTCCACCCTCCTTTTGATCTATGTGGAGCACCAAGAAAGCTGTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTTATTTACATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAGGGAGATAAAGCTGGGTGACATATTAAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTATATTAAGAACAAAGGTGTGATGAACACTCATGATGAGGACGCTTTTGCCTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCGAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAGCACCCAACTCTGTTCATGCCAGAGAAGTAATGAGCTTTTTGGGTGGTGTAGATTTGTGTGATGGCCGGTATGACACAGAGAAACACTCATTGTTTCAGACACTCACTGAGGAATCCCATTACCATGACTTCTACCAGACAAACATAGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGATGCTGCTTGGGATGTGTTAACAAATTTTGAGCAAAGATGGACAAAGCAATGTGATGCTTCTCTTCTAGTCCCTGCTGGCACCTTGGAAAATCTCATTTCCACATACTCAAGTATTCCCAAAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTGTCTGCTAGCCAGTTGTTTAGAAAGCTGACTGTGGAGAGAAGCATCCATGAAGCCTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAATATTTTATTGGGGGGTGCCATTTGTGGCAGAAAGATAGGCATAGTGGATGCAGGAATCTGATTCCTGTGGAGATTGCACTCAAGGTGGTCAGTAAGATTAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCACTGGACCAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGGAAGCCAGGGCATCCTAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAACGAAAAGAGGAGTATCTTCCACCACATTCTCCCCATCCTGAAACACAATACTGGAATGCACAAAAAAATAGGAGGTTCCCGGTCTATGTTCACTCCAAGATCATGATAGTGGACGATCTATACATATTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAAATTGCCATAGGGGCATACCAATCTCAAGATGGAGCTGATCACCACATAAGCCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAACACACTGGAAGCACTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGCGGTCAATAGGAGATCACATGTGGGGAATCTACAGTAGTGAAGAAATTGTCGACATGGAAGGTGTGCACCTTGTAACTTATCCTGTGAAAGTAACCCAAGAAGGAACTGTGGAGGATCCGGATGATGGTGGGGATCATTTTCCTGATACAAAATCTCCAGTGAAGGGGAAGAGATCAAAATTCTTGGCCCCTGTATTTACTACTTAA 2277 0.4326 MEEKPKLLIHGTIEATIFNATPYSPSFPFTCVCTNGKPAYVTINIDKKKVAKTTQEHERVWNQTFQIQCAHPEDSAITITLKTSCSILGKFHMQAKRLKEESLINGFFPLLMENGKPNPQLKLRFMLWFKPADMEPSWTKLLSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFDLCGAPRKLWEDVYKAIEGAKYFIYIAGWSFNPKMVLVRDPQTEIPHAREIKLGDILKKKAEEGVAVRVMIWDDETSLPYIKNKGVMNTHDEDAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRAPNSVHAREVMSFLGGVDLCDGRYDTEKHSLFQTLTEESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGDAAWDVLTNFEQRWTKQCDASLLVPAGTLENLISTYSSIPKERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGKPGHPRDYLNFFCLANREKKRKEEYLPPHSPHPETQYWNAQKNRRFPVYVHSKIMIVDDLYILIGSANVNQRSMDGQRDTEIAIGAYQSQDGADHHISRGDIHAYRMSLWYEHTGSTEELFLEPESLACVQRMRSIGDHMWGIYSSEEIVDMEGVHLVTYPVKVTQEGTVEDPDDGGDHFPDTKSPVKGKRSKFLAPVFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04168 758 Gene3D Endonuclease Chain A 172 413 - -
Pumo4g04168 758 SMART pld_4 296 333 IPR001736 GO:0003824
Pumo4g04168 758 SMART pld_4 603 630 IPR001736 GO:0003824
Pumo4g04168 758 CDD PLDc_pPLD_like_2 445 647 - -
Pumo4g04168 758 SUPERFAMILY Phospholipase D/nuclease 146 406 - -
Pumo4g04168 758 Pfam Phospholipase D Active site motif 607 630 IPR001736 GO:0003824
Pumo4g04168 758 Pfam C2 domain 39 110 IPR000008 -
Pumo4g04168 758 PIRSF PLD_plant 3 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo4g04168 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Pumo4g04168 758 SUPERFAMILY Phospholipase D/nuclease 421 687 - -
Pumo4g04168 758 MobiDBLite consensus disorder prediction 726 746 - -
Pumo4g04168 758 Gene3D Endonuclease Chain A 414 652 - -
Pumo4g04168 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Pumo4g04168 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 126 IPR035892 -
Pumo4g04168 758 PANTHER PHOSPHOLIPASE D 8 742 IPR015679 -
Pumo4g04168 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04168 Pumo-Chr4 82352786 82355733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04168 31 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.483 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04168 K01115 - gmx:100807431 1504.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04168 4 82352786 82355733 Pumo4g04168 4 82352786 82355733 ECH
Pumo4g04168 4 82352786 82355733 Pumo7g00333 7 4370633 4374321 PCT