Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04164 ATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAAATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGCCCTATAATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGACGTGAAGTATGTGATAAATTATGACTTCCCAGGATCACTTGAGGATTATGTTCATCGCATTGGTCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCGAAGGAACTTATAACCATACTTGAGGAGGCTGGACAGAGAGTGAGTCCTGAATTGGCTGCAATGGGGCGTGGTGCACCCCCTCCACCTTCAGGAGGTTTCCGAGACCGTGGGAAGGGTTATGGCAGTGGTCGCCCATGGAGCTGA 489 0.4765 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGKGYGSGRPWS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04164 162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 137 IPR001650 -
Pumo4g04164 162 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 4 136 - -
Pumo4g04164 162 CDD SF2_C_DEAD 2 107 - -
Pumo4g04164 162 MobiDBLite consensus disorder prediction 133 162 - -
Pumo4g04164 162 FunFam ATP-dependent RNA helicase RhlB 1 140 - -
Pumo4g04164 162 Pfam Helicase conserved C-terminal domain 3 98 IPR001650 -
Pumo4g04164 162 SMART helicmild6 17 98 IPR001650 -
Pumo4g04164 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 133 IPR027417 -
Pumo4g04164 162 Gene3D - 1 138 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04164 Pumo-Chr4 82336297 82337539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04164 4 118 Eukaryotic Initiation Factors Gene Family AT3G19760 41.739 2.15e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04164 K12823 - zju:107403752 312.768