Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04163 ATGAGCCGCTCCGGCGACCCCGCTTCCTACCGCGACCGAAGAAGTGATTCGGGGCTGGGCGCACCTTCAGCGACAGCCTACGGTGGTTCCAGCAGAAGAAACTACGACGACGTTTCGCCCCGCAAAGTGAATTTGGATGGATTGCCTCATTTCGAGAAAAACTTCTACACCGAATCGCCCTCCGTTAGGGCAATGACAGAGCCCGAGGTTGACGACTACCGTCAACGCCGTGAAATCACCGTCCAAGGCCGTGACGTCCCCAAACCCGTTAAGTCCTTTCACGATATTGGTTTCCCAGAATATGTAATGCAAGAAATTAACAAAGCTGGCTTTGTTGAACCTACACCTATTCAGTCCCAAGGTTGGCCTATGGCTTTGAAGGGGCGTGATCTTATAGGAATTGCGGAGACGGGGTCGGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTGCATGTTAATGCACAGCCAATTCTAGATCCTGGAGATGGACCCATTGTGTTAGTTTTGGCCCCAACGCGTGAACTTGCTGTTCAGATACAACAAGAGGCTACTAAATTTGGAGCTTCGTCGAGGATTAAGAGTACGTGCATATATGGTGGGGTTCCCAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAGATTGTAATTGCCACTCCGGGAAGGTTGATTGATATGCTTGAGTCGAATCATACTAACTTGCGGAGGGTCACTTACCTGGTACTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTGTCTCTCAGATTCGTCCAGATCGTCAAACTTTGTACTGGAGTGCCACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCTATACGGCAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGATAAGTAG 978 0.4847 MSRSGDPASYRDRRSDSGLGAPSATAYGGSSRRNYDDVSPRKVNLDGLPHFEKNFYTESPSVRAMTEPEVDDYRQRREITVQGRDVPKPVKSFHDIGFPEYVMQEINKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSPDLKANHAIRQYVDIVPEKQKYDK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04163 325 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Pumo4g04163 325 Gene3D - 54 301 IPR027417 -
Pumo4g04163 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 299 IPR027417 -
Pumo4g04163 325 CDD DEADc_DDX5_DDX17 102 297 - -
Pumo4g04163 325 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Pumo4g04163 325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Pumo4g04163 325 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 324 - -
Pumo4g04163 325 SMART ultradead3 110 313 IPR014001 -
Pumo4g04163 325 MobiDBLite consensus disorder prediction 1 44 - -
Pumo4g04163 325 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Pumo4g04163 325 FunFam probable ATP-dependent RNA helicase DDX17 53 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04163 Pumo-Chr4 82332818 82336184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04163 78 324 Eukaryotic Initiation Factors Gene Family AT3G19760 31.048 3.21e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04163 K12823 - gmx:100790464 582.022