Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04156 ATGAAATGGACGCACAGTTCTATGGACTCTCCAATACCACACCATAAGCATCACCATTCCAGAAGAAAGTCCAACGACCAAGTTCCTGGGCCTACCTATCCAATCCACCCTCGTACTCATCAAGGTCCTCCAGTCTTCAGATCACAACATCCATTCTCTTCACCTATGAGCCGGGATTTACATGCACCCACACCATCACCAGCACCAGCACCAACACCTGCACCATCAACAACAGTTCTATCACACCACTTGAATGTGCCCTCTCCTTCACCTAGAATTTCACCTCCAGGTTCATCATTGAAGAAGACAAGGACTCCACCACCAGCATATGCTTTGGTTCTACCATCTCCACCGCCTAACAAAGATTGTATGTCGGTGAGTTGCTCTGAACCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTTCGCATCAGCATTGCAATATACAAATTTTTTCCTTTGGTTTCCAAGCTGGCCAAAGAAATTGCAGCCAGTGTTTTGCTGAACCGTAATCAAGTACGCATTGTGGGAGCTGATGCAACTAGCCAGCAGCTCGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAGTTTGATGATACAACAGCATTTTTAATATATAAGAAATTCTGGCAGAGAGAGATTCTCAATGATGCTTATGCCTTTGGTGCCTATGAAGTGCTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAAATGTTTATGGTATAGATGTTGAACCATACCCTGGTCGTGGCAACAATGGAACAATAGTGAAACCTTTAGGAGTAGATATCTCAGGGAAGAAAAAAGAAGGGAGTGGTGGAAGAATGGTTATTATGATCGTGCTGTCATCTTTTACTGTCTTTGTTCTATTCATTGGAGTTACCTGGCTTTGTCTCTTGAAATGTGGTTCCTACACTCTTGAACCTGAACAAATTCCAGATGTCAAAATTTCATCCTCTTCAAAGCGATCAGGGACTGCCAGTGCTAGGTCATTGACTTATGGGAGCATGCCGGGTTCTAGATCAATGTCCTTCAATTCTGGAGCAATAATATATACAGGATCAGCTAAAATATTTACTTTGAATGAAATAGAGAAAGCAACAAATAACTTCAATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGTATTGTTTATAAAGGTGACCTAGATGATGGCAGGGATGTAGCAGTGAAGATTCTCAAAAGAGATGACCAGCATGGTGACCGTGAATTCTTTGTAGAAGCTGAGATGCTTAGCCGCTTGCACCATAGAAATTTAGTTAAATTGATAGGCATATGCACAGAGAAACAGACTCGCTGCTTAGTCTATGAGCTTGTCCCTAATGGCAGTGTGGAATCCCACTTACATGCAATTGCATCCATGTGTGTGCAACCAGAAGTCACTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAAGTTATGTAAGACCAAAAAGTTTTCGAGAAGATGGTCTTGTAACTGGTCTTGCAACCAGTGTTCCAGGTGAGAGAGTGGGCTTTTCAGAGTGTAACAAAACCCTGCCTCAGCCTGGTTAA 1641 0.4314 MKWTHSSMDSPIPHHKHHHSRRKSNDQVPGPTYPIHPRTHQGPPVFRSQHPFSSPMSRDLHAPTPSPAPAPTPAPSTTVLSHHLNVPSPSPRISPPGSSLKKTRTPPPAYALVLPSPPPNKDCMSVSCSEPLTYTPPGSPCGCVWPLQVKLRISIAIYKFFPLVSKLAKEIAASVLLNRNQVRIVGADATSQQLEKTTVLINLVPQGVKFDDTTAFLIYKKFWQREILNDAYAFGAYEVLYVHYPGLPPSPPSNVYGIDVEPYPGRGNNGTIVKPLGVDISGKKKEGSGGRMVIMIVLSSFTVFVLFIGVTWLCLLKCGSYTLEPEQIPDVKISSSSKRSGTASARSLTYGSMPGSRSMSFNSGAIIYTGSAKIFTLNEIEKATNNFNSSRILGEGGFGIVYKGDLDDGRDVAVKILKRDDQHGDREFFVEAEMLSRLHHRNLVKLIGICTEKQTRCLVYELVPNGSVESHLHAIASMCVQPEVTQRPFMGEVVQALKLVCSEFEETSYVRPKSFREDGLVTGLATSVPGERVGFSECNKTLPQPG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04156 546 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Pumo4g04156 546 FunFam receptor-like serine/threonine-protein kinase ALE2 360 462 - -
Pumo4g04156 546 PANTHER OS01G0750732 PROTEIN 115 472 - -
Pumo4g04156 546 MobiDBLite consensus disorder prediction 1 116 - -
Pumo4g04156 546 Pfam Protein tyrosine and serine/threonine kinase 390 475 IPR001245 GO:0004672|GO:0006468
Pumo4g04156 546 SUPERFAMILY Protein kinase-like (PK-like) 372 499 IPR011009 -
Pumo4g04156 546 Gene3D Phosphorylase Kinase; domain 1 359 462 - -
Pumo4g04156 546 ProSiteProfiles Protein kinase domain profile. 387 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04156 Pumo-Chr4 82196216 82202015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04156 470 518 Receptor kinase-like Gene Family AT5G56890 54.545 4.37e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Pumo4g04156 PK_Tyr_Ser-Thr 5.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04156 - - gmx:100775318 838.565