LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g04153	ATGGCAACCAACGAAGCAGAAGAAGCAGCCAAAAGGGTCCAATACCCACTGGACTCTTCCTCCTACAAGCTCCTCAAAGAGATCGGCGAAGGCATGAGCGCCGTCGTGTACAAGGCCCTCTGCATCCCCATGAACTCCGCCGCGGTTGCAATCAAATCCATCGACCTTGATCCACACTGTTCCTTCACCGTGGATCGCCGCCTCTGGGTGGTGATGCCCTTCATGGCCGCAGGATCGTTGCAATCCATAATTTCTCATTCCTACCCCAACGGCTTAACGGAGCCCTGCATCGCGGTGGTTCTCAAAGACACCCTCAACGCTCTCTCGTACCTCCACGGCCAGGGCCATCTCCACAGAGACATAAAAGCCGGTAACATCCTCGTAGACACCAACGGACTGGTGAAGCTCGCGGATTTTGGTGTCTCCGCGTCCATCTACGAGTCCACGTGTTCGTCTCTCAAGTTCACCGATGTTGCGGGCACGCCGTATTGGATGGCTCCTGAGGTGATTCACTCACACACCGGTTACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACCGCTCTGGAGCTTGCGCATGGAAGGCCTCCCCTCTCGCACCTTCCACCTTCCAAGTCCATGATGCTCAAGATCACCAAGCGATTTCGTTTCTCCGATTTTGATAAGTATAGGAAGGGGAATGGGAAGAAGTTTTCTAAGGCGTTTAAGGACTTGGTGGCTTCTTGTCTCGACCAAGATCCTTCTAAGAGACCCACTGCTGACAAGTTGCTCAAACATCCCTTCTTTAAAAACTGTAAGGGAACTGATTTTCTGGTGAAGAATGTGCTCCAAGGGTTGCCCACTGTGGAGAAAAGGTATAAGGAGAGCGAGGTTAATGAGCATGCAGATGATGATGATGATGATGACCCTGCCTTGCAGGTGAAGCAGAGAAGGATCAGTGGGTGGAACTTCAATCAAGACGGGTTGGAACTTGACCCTGTGTTTCCTAACGATGATGCAGCGGTGAAAGAGGTTCGGTTTGGAGGGGAAACGGTTATCCAACAAACGGGGGAGCATGTTAACATTGTTGCTGCTGCTGCACCTGCAGGAACCATGGTGGAAAAAGTGGGTGGTGTTGTGAACAACAAGGAAGGCATGTTGGCGACTCTGAATGTATTGAAAGGGAGCTTGGAGCAAGAGCTGTGGCAAGTGAAGTTTCTGGTGAATGCGATACAAGGAGAGGAGACTCAACTCACTCAAGTGACTGATCACAGTGAGGAGCAGGAGATTTCTAAGCTGAGAGCTGAATTAGAAAATGAGAGGAAGAAGAACTTGCAGTTGGAGTTGCAGCTCCAAACCTGCAAGCTCCACCTTTCTTCTGGTCTTAATACTTCCAAGTAA	1383	0.5047	MATNEAEEAAKRVQYPLDSSSYKLLKEIGEGMSAVVYKALCIPMNSAAVAIKSIDLDPHCSFTVDRRLWVVMPFMAAGSLQSIISHSYPNGLTEPCIAVVLKDTLNALSYLHGQGHLHRDIKAGNILVDTNGLVKLADFGVSASIYESTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKGNGKKFSKAFKDLVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLQGLPTVEKRYKESEVNEHADDDDDDDPALQVKQRRISGWNFNQDGLELDPVFPNDDAAVKEVRFGGETVIQQTGEHVNIVAAAAPAGTMVEKVGGVVNNKEGMLATLNVLKGSLEQELWQVKFLVNAIQGEETQLTQVTDHSEEQEISKLRAELENERKKNLQLELQLQTCKLHLSSGLNTSK	460

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo4g04153	460	Coils	Coil	417	444	-	-
Pumo4g04153	460	Gene3D	Phosphorylase Kinase; domain 1	10	58	-	-
Pumo4g04153	460	FunFam	Serine/threonine-protein kinase BLUS1	78	305	-	-
Pumo4g04153	460	ProSiteProfiles	Protein kinase domain profile.	1	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo4g04153	460	ProSitePatterns	Protein kinases ATP-binding region signature.	28	52	IPR017441	GO:0005524
Pumo4g04153	460	Pfam	Protein kinase domain	62	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo4g04153	460	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	14	428	IPR047173	GO:0043539
Pumo4g04153	460	SUPERFAMILY	Protein kinase-like (PK-like)	16	268	IPR011009	-
Pumo4g04153	460	Gene3D	Transferase(Phosphotransferase) domain 1	78	312	-	-
Pumo4g04153	460	SMART	serkin_6	22	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g04153	Pumo-Chr4	82143024	82144584	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g04153	9	440	MAP Kinase Kinase Kinase Kinase	AT4G14480	52.165	1.13e-161	464

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Pumo4g04153		Pkinase	6e-47	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g04153	K08835		-	gmx:100820227	721.079

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