Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04150 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCCTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAACAATACTTTGCCCCACCACAAACTCAAACTCAGCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTGGTCGCCTTGTCTCCAAAGACTCTCTTGGCCACTAACAGGTTCATTTGTGAGATCTGCAACAAGGGGTTTCAAAGAGAACAGAATCTCCAACTTCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGATAAGGAAGAAGGTGTATGTGTGCCCAGAACCTAGCTGCGTGCACCACGACCCTTCAAGGGCCCTGGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATAGGCATAGGCATAGGCATAGGCATAGTAGCCAACTCAACTCCAACTCCTCAACCACCACCAGCAGCAGCAGCAGCAGGAGTAGTGATCTCTTCATCCTCTCATCATCAAGACATCCATGGTAACAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATACCCCCTTGGCTTGGACAACCATCACCCTCCACCGTTGATCTCTCTTCCTCATCATCATCATTCTTTTCTCGTCAAGATCATCTCCATGAAAACCCTAACCCTAGAGGTGGTGGTCCCACTCTTCTCCCTCCCTACCAAACAGCGCCTTCCCCTCCTTACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGTGCAACGATGAGCAAAACCGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTGCCAATGCTGCTTTGAATTTGTCCTCACGTGACCACCAGATGACCCCCACTTCCAACACCACCACCACTCCCCATGGCTTGGTACCTTTCCCGAATAAAGCTGTTCCTGGTGCTAGTGTTGGTGTTGGTGTTGGTGTTTCTCCATCACTCCTTCACCATGTTATCAACTCTTTCTCTCCCCCCTTTGAAGGGAGTACTTCTTTTGAGAACACTTTTGGTGGTGGTGGAGCCATGACGAAAACAACCACCGCTAATGACGGTAGCGGTGGTGCCGGAGGAAATAATAATGAAGCCATGACCAGAGATTTCTTGGGTCTTAGACCTCTCTCTCACACTGATATCCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCTCCCAACATAGCCAAACCCAAAACCCTTGGCAAGGTTAG 1470 0.4918 MSNLTSASGEASASSGNRTEIGTDYSQQYFAPPQTQTQPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIGIGIGIGIVANSTPTPQPPPAAAAAGVVISSSSHHQDIHGNNFPLKKEQQGFIPPWLGQPSPSTVDLSSSSSSFFSRQDHLHENPNPRGGGPTLLPPYQTAPSPPYMSATALLQKAAQMGATMSKTGSMIRTHQQAHVSADSANAALNLSSRDHQMTPTSNTTTTPHGLVPFPNKAVPGASVGVGVGVSPSLLHHVINSFSPPFEGSTSFENTFGGGGAMTKTTTANDGSGGAGGNNNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSSQHSQTQNPWQG 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04150 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Pumo4g04150 489 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Pumo4g04150 489 MobiDBLite consensus disorder prediction 1 54 - -
Pumo4g04150 489 Gene3D Classic Zinc Finger 125 204 - -
Pumo4g04150 489 MobiDBLite consensus disorder prediction 270 289 - -
Pumo4g04150 489 FunFam protein indeterminate-domain 12-like 50 118 - -
Pumo4g04150 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 477 IPR031140 -
Pumo4g04150 489 MobiDBLite consensus disorder prediction 260 315 - -
Pumo4g04150 489 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pumo4g04150 489 SMART c2h2final6 71 93 IPR013087 -
Pumo4g04150 489 SMART c2h2final6 112 142 IPR013087 -
Pumo4g04150 489 SMART c2h2final6 147 167 IPR013087 -
Pumo4g04150 489 MobiDBLite consensus disorder prediction 1 43 - -
Pumo4g04150 489 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pumo4g04150 489 Gene3D Classic Zinc Finger 50 117 - -
Pumo4g04150 489 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04150 Pumo-Chr4 82109066 82112254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04150 1 489 IDZ Gene Family AT3G13810 47.417 1.44e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g04150 zf-C2H2_jaz 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04150 K25870 - gmx:100819692 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04150 4 82109066 82112254 Pumo7g00355 7 4681778 4689880 PCT