Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04144 ATGGATTATTATGTTTCTCAACACTCGCAATTGGAATCTGAGGCTGACGCCTACAATGTTGACGCCAGTAATGAGCACGTAAAACCCTCCTTCAATCGTCGCGATTCCTCTTCAGGGAAACTCTTCGTTGGAGGCATTTCTTGGGAGACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGTGAAGTAACAGATTCAGTGATAATGACAAATAAACTTTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCCGATTCAGCTGTCGCAGATGAAGTTTTGGAACAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGATGTTGCTGGAGTATTCAAAACAAAGAAGATATTTGTTGGGGGAATACCCCAGTTTTTCACTGATGATGAGTTGAGGGAATACTTTTCACCTTATGGTGATGTTATTGAGTGCCAAATCATGCTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATTACAGCAGCACCTCACGAAAGTCATATGGTGGTTTTGGCAATGGAATGGATGGATATGGTGGGAATAATTATAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACTGATTCTGGAATGAACGGAGCATATGGCCATTTTGACGGGAGCTTTGGGGGAAATGCTGCCTCTGTTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGACTCAATTCTTATGGTAATCCTGGGGGTTATGGTGGCGGCCTTACTTCCTATGGAGATGGTAATGCATATGGAAGAAGTGGTAGTTTCAATCGCACTGGTGGCTATGACGGCGGCAAAGTGGCTGAGAAGGATGATGGTCCTACAACTGGAAGGTACCATCCTTACTGGAAGTGA 1059 0.4315 MDYYVSQHSQLESEADAYNVDASNEHVKPSFNRRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLEQEHTIDGRVVEVKRTVPREDMDVAGVFKTKKIFVGGIPQFFTDDELREYFSPYGDVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYSSTSRKSYGGFGNGMDGYGGNNYRNRNHGKRGGQYTDSGMNGAYGHFDGSFGGNAASVYGGYCGYGYGFGYGGPMYCFGGYGLNSYGNPGGYGGGLTSYGDGNAYGRSGSFNRTGGYDGGKVAEKDDGPTTGRYHPYWK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04144 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 38 119 - -
Pumo4g04144 352 SUPERFAMILY RNA-binding domain, RBD 127 235 IPR035979 GO:0003676
Pumo4g04144 352 Gene3D - 121 255 IPR012677 -
Pumo4g04144 352 CDD RRM1_hnRNPA_hnRNPD_like 41 111 - -
Pumo4g04144 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Pumo4g04144 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 108 IPR000504 GO:0003723
Pumo4g04144 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Pumo4g04144 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 115 IPR000504 GO:0003723
Pumo4g04144 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 14 351 - -
Pumo4g04144 352 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 120 255 - -
Pumo4g04144 352 MobiDBLite consensus disorder prediction 329 352 - -
Pumo4g04144 352 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Pumo4g04144 352 Gene3D - 37 120 IPR012677 -
Pumo4g04144 352 SMART rrm1_1 40 111 IPR000504 GO:0003723
Pumo4g04144 352 SMART rrm1_1 129 202 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04144 Pumo-Chr4 82049183 82052613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04144 26 207 Eukaryotic Initiation Factors Gene Family AT4G34110 26.486 4.25e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04144 K12741 - gmx:100818080 570.466