Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04140 ATGGGTGCTTCGGGAAAGTGGTTTAAGTCACTTATTCCTTTTCGAAAGACCTCAACTTCAGCAACTGATCAAGAGAAGGGTGGTGACAACAAGAGTAAGAAGAAGTGGAAGCTATGGAGGGCTTCTTCAGAAGGGTCCACGAAGAAAGTTGGTGGTGCTGCTGCATCTGATTCTTCCCTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCCGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGCAGTGGTAAGGCTACAAGCCATTTTTAGAGGCCGGCTAGTCAGGAAGCAAGCAGCCGTTACTCTAAGGTGCATGCAGGCTCTTGTTCGAGTTCAGGCGCGTGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCAGTGCAGAAATTACTTGATGAGCATCGCAACCAAGCCTATCCTTTTAAGCAGATTGAGCAAGGATGGTGTGACATTCCTGGAACTGTGGATGAAGTTAGAGCAAAGCTACGAATGAGGCAGGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTGTCTCTCCACACAGTCAAGACTGATTGCTAGTCCAAACTCAAAAGCCACTAAGGTATTGACTCCTCACAAGCATAACAACCTAAGCAACAAGAGCTTAGGATATAGCTTGTTGGAACGCTGGATGGAGGCCAAGCCATGGGAGAGTCCAATCTCCAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAGGAATGGTATGACAACTAGGATTTCAGTTAAACCTATTATAACCAGTCAATCGACTTCATCATCTTCAGCCATAAGCTCTGAATATGTGTGTGATGATAGCCCTGTGTCAACGTCTTATACATCTGGATCTCCATCTTTGCCATCCACCAATACTGTTTTGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAGCCAAGTTACATGAATTTGACAGAATCAACTAAGGCTAAACTGAAAGCTTGCAGGAGTTCTTCACAGAATTCAAAGAGACTTGTAATGGAGGACAGTGTGTCTCACAGCACAACAACAGGCCTTATGAATGGAGATACTAGAGGCAGTTCTGATTCTGATCCTTCAGTTAACTTGTGGAAGGATTTTTGTGCAACACCTCTAAGGGCAAATTATCAAAAACGACAAATTAGGATATGA 1230 0.4528 MGASGKWFKSLIPFRKTSTSATDQEKGGDNKSKKKWKLWRASSEGSTKKVGGAAASDSSLTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARNVRNSPEGKAVQKLLDEHRNQAYPFKQIEQGWCDIPGTVDEVRAKLRMRQEGAIKRDRAMAYCLSTQSRLIASPNSKATKVLTPHKHNNLSNKSLGYSLLERWMEAKPWESPISRKSEDLVPAFQSRRNGMTTRISVKPIITSQSTSSSSAISSEYVCDDSPVSTSYTSGSPSLPSTNTVLVEATEERDVHQPSYMNLTESTKAKLKACRSSSQNSKRLVMEDSVSHSTTTGLMNGDTRGSSDSDPSVNLWKDFCATPLRANYQKRQIRI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04140 409 MobiDBLite consensus disorder prediction 350 383 - -
Pumo4g04140 409 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515
Pumo4g04140 409 Pfam IQ calmodulin-binding motif 101 118 IPR000048 GO:0005515
Pumo4g04140 409 Gene3D - 74 124 - -
Pumo4g04140 409 ProSiteProfiles IQ motif profile. 101 128 IPR000048 GO:0005515
Pumo4g04140 409 PANTHER IQ-DOMAIN 5-RELATED 1 368 - -
Pumo4g04140 409 SMART iq_5 76 98 IPR000048 GO:0005515
Pumo4g04140 409 SMART iq_5 99 120 IPR000048 GO:0005515
Pumo4g04140 409 ProSiteProfiles IQ motif profile. 77 105 IPR000048 GO:0005515
Pumo4g04140 409 MobiDBLite consensus disorder prediction 18 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04140 Pumo-Chr4 82029075 82031562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04140 1 393 IQD Protein Family AT1G72670 46.387 1.25e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04140 - - gmx:100788715 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04140 4 82029075 82031562 Pumo7g00365 7 4802696 4805549 PCT