Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04135 ATGTCAGTCATTGTGCGTGATGAGGAGGGAAGCATCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCCCTGGCTTACAAAAAGCTTGATGACCAAGAGTACTCTGATTGGAATAACAAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGACAGAGAGGCAATGCTTGAGCAGGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACCGCTGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTCGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCTGTAACTAATGATGGGAAAGAGGTCATCAAAGGCAACATCTTGAATCAAATCACAAATGCTTCACAAATGATAAAGCTGGAAAAGGATCCACATGCTGCGTTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATGTGAAGCACCAATTTTTGGGATTGGCTGTTGGTTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGGTAACAAGGCTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGCTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTCATCTTCTTCCTCGTCATAATAATCTTCTATGACCAAGCATTCCGTGCGAATGGCCAGATCGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATCTGGGCTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACATCTTTCTCATTTTATATGGCATGCTTCCACCACAATATTCCAAGTCTGCCTACCAACTATTGGTTGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAGTAACCCTATTAGTAACAATCACATGCGTTCTTCCTTATCTTGCCCACATATCCTTCCAAAGATGTTTTCATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACCAGGGAGCGGTCTAAAGCAAGGCAGGAAACCAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCAGTTTAAAGGTAAGCTGCAGAAGAAGCAGCAGTCTTCAGTGGGGGCTTTGTCCCCATCATGA 1806 0.4219 MSVIVRDEEGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYKKLDDQEYSDWNNKFQKAKTAVGSDREAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITMNSDSVTNDGKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRANGQIADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYIFLILYGMLPPQYSKSAYQLLVEVLAPAPIYWTVTLLVTITCVLPYLAHISFQRCFHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQFKGKLQKKQQSSVGALSPS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04135 601 Gene3D - 1 80 IPR023299 GO:0000166
Pumo4g04135 601 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 113 IPR023299 GO:0000166
Pumo4g04135 601 FunFam Phospholipid-transporting ATPase 101 297 - -
Pumo4g04135 601 NCBIfam HAD-IC family P-type ATPase 223 338 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo4g04135 601 SUPERFAMILY HAD-like 94 305 IPR036412 -
Pumo4g04135 601 NCBIfam phospholipid-translocating P-type ATPase 1 543 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Pumo4g04135 601 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 559 - -
Pumo4g04135 601 Gene3D - 97 297 IPR023214 -
Pumo4g04135 601 Pfam Phospholipid-translocating P-type ATPase C-terminal 285 535 IPR032630 -
Pumo4g04135 601 SUPERFAMILY Calcium ATPase, transmembrane domain M 306 533 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04135 Pumo-Chr4 81983905 81987749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04135 1 593 Primary Pumps ATPases AT1G17500 80.808 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04135 K01530 - gmx:100778710 1174.07