Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04117 ATGGAGGCGCGAAGTCGGTCCGTGGAAGAAATATTCGAGGATTTCAAAGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGATGTTGAAGCTTTCTACAGCCAGTGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGAGCAATGGGAAGTAAATTTACCTGTTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATATGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCCAAGTCTAACTCTAAAGCGCGGGCTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTACAACCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGACGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGAGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4404 MEARSRSVEEIFEDFKGRRAGIIKALTTDVEAFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGYDKTDRKRLFSMINELPTIFEVVTGAAKKQVKEKSSVSNNSGSKSKSNSKARASETQGRQSKALQPKDEDEGLEEQDDDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04117 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Pumo4g04117 248 CDD PHD_AL_plant 195 245 IPR044104 -
Pumo4g04117 248 SMART PHD_3 195 243 IPR001965 -
Pumo4g04117 248 MobiDBLite consensus disorder prediction 141 191 - -
Pumo4g04117 248 PANTHER CPG BINDING PROTEIN 5 248 IPR045104 GO:0006355|GO:0042393
Pumo4g04117 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Pumo4g04117 248 FunFam PHD finger alfin-like protein 188 244 - -
Pumo4g04117 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Pumo4g04117 248 MobiDBLite consensus disorder prediction 141 171 - -
Pumo4g04117 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Pumo4g04117 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Pumo4g04117 248 Pfam PHD-finger 196 245 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04117 Pumo-Chr4 81831573 81835629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04117 6 248 Alfin-like Transcription Factor Family AT3G42790 75.720 4.11e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pumo4g04117 Alfin 3.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04117 K26274 - gmx:100170696 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00421 7 6550664 6554937 Pumo4g04117 4 81831573 81835629 ECH
Pumo4g04117 4 81831573 81835629 Pumo4g04117 4 81831573 81835629 ECH
Pumo4g04117 4 81831573 81835629 Pumo7g00421 7 6550664 6554937 PCT