Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04116 ATGAATTGCTTATGTGAGAAAGACTGTGGTCTATTTTCTTCTCATTCAACATCCCACTATGTTCTTGGATGCCCATCATGGGGGACTTCTGAATCTGAAGTCCAACAATCATCTATGTCCAGAAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAACAATGCCACAAGAGCAAGACATTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATGCACTGATCAATCTTATCCTGAAGTTGGTTCAGCACAATCTGATCAAATTTCTTTCCATCATAGTTCTTCAACTTGTTCAACACTTAGCAGAACTGGGGGAAAGAAGAGTATGGGATGCGCCATCAGGACATTTATGGGGAGTCAGGATTTCACCTTCCCTCCTCTACTACTGGATCACAGCCAAACACTTGCTCATATTGCATGTCACTATGCTGATCCATGCTATAGTGGCCTAATGGCTGCTGCAGATGGTCCACAGTCTAAGCCAGTGGAAACTGCTACTGTTCGAATTCCTCTACCATTGGATGTCACAGAAGAACCAATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTTGAAGCACATAACAAACCTATCAAGGATCGGAAACCGTATCTTCACGAGTCGCGCCATCAACATGCATTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACTAAAAATCTCCAACAATCAAAGCTTACTTCAGCAAATCTTACACGTGGAAATATTGCAGAATCTAAGATGCATCAAATAGAAAACTATAGAGATGGTGCTGATGTCACATATGCATCTAACAGTGATGCAAGAAGTATGCAGAATTATACAGCTGATAAGGGTGGTGGCACCACTCAGCACCCTCTATTTGTCTACATGTGA 915 0.4219 MNCLCEKDCGLFSSHSTSHYVLGCPSWGTSESEVQQSSMSRSLSLKVDVLPQQCHKSKTLSFQFQEQDSSSTQCTDQSYPEVGSAQSDQISFHHSSSTCSTLSRTGGKKSMGCAIRTFMGSQDFTFPPLLLDHSQTLAHIACHYADPCYSGLMAAADGPQSKPVETATVRIPLPLDVTEEPIYVNSKQYHAILRRRQYRAKLEAHNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKNLQQSKLTSANLTRGNIAESKMHQIENYRDGADVTYASNSDARSMQNYTADKGGGTTQHPLFVYM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04116 304 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 40 281 IPR001289 GO:0003700|GO:0006355
Pumo4g04116 304 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Pumo4g04116 304 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Pumo4g04116 304 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Pumo4g04116 304 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Pumo4g04116 304 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Pumo4g04116 304 Gene3D - 178 239 - -
Pumo4g04116 304 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04116 Pumo-Chr4 81825970 81830602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04116 14 279 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.456 1.06e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo4g04116 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04116 K08064 - gmx:100803893 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04116 4 81825970 81830602 Pumo4g04116 4 81825970 81830602 ECH
Pumo4g04116 4 81825970 81830602 Pumo7g00422 7 6558737 6563503 PCT
Pumo10g00685 10 8844899 8847183 Pumo4g04116 4 81825970 81830602 PCT