Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04107 ATGTCATTGAAGGCAACTAACCTAAGAGACAATGAAATTGAGCCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACAGGTCCAGAAAAATAAAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGAATATGCAGGCAACATGGAATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTCGACTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTAGTGGCAGGAGGGTCAATCATCCAGGAAATTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAGTACTATAAAAAACCCTGTGCCTGTTACACAAGATGCAGTCTCCGTACCACCTGCACCTTGTTGTGAAGGTGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGCTTCTTCAGTTGATTGTAGTGAAGATTCAAAATCAATGGCAATCAATGATGGGTTGTGCCAGACGGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTCTTGCAAGAGAACAGGATAAACAGATTCTGAACAAGGGTGGTTTGAGAGTAGAAAAATTCAAACGCAATATTGTTGGCCAGTGTTCAAATTACTTGATTGATGATGAGATGGACATTGGTGTAGATGGGGATGATGGGGTTGTTGAACCTAACCACCCTACTTCCTCAAGCTTGACAGACTCATCTAATGGTTCTGGTTCAATGATGCATAGCAGTTCATCAGGTTCTCAGAGCTTTGAGAACCAGAATCAGTTCAAAGTCAAATCAACCATTGTTGATAGTGGATCGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCATCTGCAGGTTGTTTCAGGCTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGCTGGTGAATGACGCTGATTTGCAAGAGTGTTTAGAAATATTGGACGATATTGGCACACGTAGCGTCAGGTTTCTTGTTCGTGATATGCCTTCGGTTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCGTAG 1245 0.4169 MSLKATNLRDNEIEPSPNQERNGSKRQVQKNKSTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGALVAGGSIIQEIDAHKSLLFPEKSTIKNPVPVTQDAVSVPPAPCCEGENFSIKLEGKLKKTNASSVDCSEDSKSMAINDGLCQTASLCTKVQDCPEQACLGSVLAREQDKQILNKGGLRVEKFKRNIVGQCSNYLIDDEMDIGVDGDDGVVEPNHPTSSSLTDSSNGSGSMMHSSSSGSQSFENQNQFKVKSTIVDSGSKLIVKATYREDTIRFKFDPSAGCFRLYEEVAARFKLQNGSFQLKYLDDEEEWVMLVNDADLQECLEILDDIGTRSVRFLVRDMPSVLSSSGSSNSYLGGSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04107 414 MobiDBLite consensus disorder prediction 1 37 - -
Pumo4g04107 414 MobiDBLite consensus disorder prediction 267 296 - -
Pumo4g04107 414 Pfam RWP-RK domain 38 86 IPR003035 -
Pumo4g04107 414 CDD PB1_NLP 315 395 IPR034891 -
Pumo4g04107 414 PANTHER PROTEIN NLP8 18 406 IPR045012 GO:0003700
Pumo4g04107 414 MobiDBLite consensus disorder prediction 1 24 - -
Pumo4g04107 414 Pfam PB1 domain 317 395 IPR000270 GO:0005515
Pumo4g04107 414 MobiDBLite consensus disorder prediction 260 296 - -
Pumo4g04107 414 SUPERFAMILY CAD & PB1 domains 309 399 - -
Pumo4g04107 414 Gene3D - 311 393 - -
Pumo4g04107 414 ProSiteProfiles PB1 domain profile. 314 396 IPR000270 GO:0005515
Pumo4g04107 414 SMART PB1_new 314 396 IPR000270 GO:0005515
Pumo4g04107 414 ProSiteProfiles RWP-RK domain profile. 20 106 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04107 Pumo-Chr4 81771136 81773657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04107 26 411 NLP Transcription Factor Family AT2G43500 51.531 9.49e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo4g04107 PB1 1.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04107 - - gmx:100804426 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04107 4 81771136 81773657 Pumo4g04107 4 81771136 81773657 ECH
Pumo4g04107 4 81771136 81773657 Pumo11g01719 11 48837155 48843000 PCT