Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04100 ATGGACATAAGTCCTTACACTACTACTAGTACTCCAAAGAAGCTTTCACCACACTCCACCATCCACTCCAATATTGCCGACGAGGCTGCAGCGTTAGATCATAACAATAACATGCACCGCAGCAACCACAGCCACACGTCCACGAGCCGTTCCTCGGACTCAAGTGAGCCTAGTGAAGACGGTAAATGGGCCCCCAAACTTCTCAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCAACCAAAACACACCATCTTCTTTGGATGCTTAACGAGCTTGCTTCACCTTATGGAGATTGCGATCAGAAACTTGCCTCTTATTTCTTGCAAGCGTTGTTCTGCAGAGCCACGGAGTCTGGTGAGAGATGCTACAAAACTCTTTCCTCCGTGGCTGAGAAGAACCACTCGTTTGACTCGGCGAGGAGGTTGATACTCAAGTTTCAAGAGGTGAGTCCTTGGACCACGTTCGGACACGTGGCATCCAACGGTGCTATTTTGGAGGCCTTGGAAGGCGAGCCGAAGCTCCACATCATCGACCTCAGCAACACGCTGTGCACGCAGTGGCCAACGCTATTGGAAGCGTTGGCCACGCGAAACGATGAGACTCCTCATCTTAAACTCACAGTGGTGGCGATAGCGGGGTCCGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTTGCAAGACTCATGGGCGTGCCCTTTGAATTCAACGTGATCAGTGGATTAAGCCAAATCACCAAAGAAGGTTTGGGGGTTCAAGAAGATGAAGCTATAGCTGTAAACTGCGTTGGGGCGTTGAGAAGAGTGGAAGTTGAAGAGAGGGAAAACTTGATTCGCGTGTTTAAGTCTCTTGGTCCTAAAGTGGTAACCGTTGTTGAGGAAGAAGCTGATTTTTGCAGCTCGAGGGAGGATTTCGTCAAGTGCTTTGAAGAGTGTCTGAAGTTCTACACTCTCTACTTCGAGATGTTGGAGGAGAGTTTCCCTCCCGCGAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCTTGCTGTGGTGGCGACTTTGAAGATGATGGAGAATTTGATTGCTGTGAGAGGAGGGAGAGAGGGATTCAATGGTGTGAGAGGCTGAGGAATGCGTTTTCGCCAAGTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTCAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAAGGAGATGATCAACTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCATCAGCATGGAAACCCTAG 1317 0.4951 MDISPYTTTSTPKKLSPHSTIHSNIADEAAALDHNNNMHRSNHSHTSTSRSSDSSEPSEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVMKEVGQRMEKFARLMGVPFEFNVISGLSQITKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVKCFEECLKFYTLYFEMLEESFPPASNERLMLERECSRSIVRVLACCGGDFEDDGEFDCCERRERGIQWCERLRNAFSPSGFSDDVVDDVKALLKRYQPGWSLVVSQGDDQLSGIYLTWKEEPVVWASAWKP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04100 438 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g04100 438 ProSiteProfiles GRAS family profile. 55 437 IPR005202 -
Pumo4g04100 438 MobiDBLite consensus disorder prediction 35 54 - -
Pumo4g04100 438 MobiDBLite consensus disorder prediction 1 62 - -
Pumo4g04100 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 427 IPR005202 -
Pumo4g04100 438 Pfam GRAS domain family 66 437 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04100 Pumo-Chr4 81692027 81694075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04100 39 438 GRAS Transcription Factor Family AT4G37650 51.887 2.76e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo4g04100 GRAS 6e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04100 - - gmx:100818806 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00462 7 7425336 7427377 Pumo4g04100 4 81692027 81694075 PCT