Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04095 ATGCCGCTTCCTTCCAAATCCGGGGAAGGCGAGGAATGGAGAAGCCCCACCAACAACCTATGGGTCGGAAATCTGCCGCCGGAGGTCACCGATTCCGATCTAATGGAACTCTTCGCTCCGTTCGGTTCTCTGGACACAATAGTCTCATATTCCTCACGCCCCTTTGCATTCGTGTTGTTCAGACGCGTCGACGACGCCAAGGCCGCCAAATCCAACTTGCAAGGCGCGTCGCTGCGCGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGTAAACAATTGTGGGTGGGTGGTTTTAGTCACGCTGTTGCGAGGGAAGATTTGGAAGCGGAATTTCGCAAATTCGGTAGGATTGAGGATTTTAAGTTCTTCATAGACCGCGGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTATTCGGGCCGTGAAAGTCATGAACGGGAAGCGTTTGGGTGGAGGCCAGATTTGTGTAGACTTCCTGAGATCACAATCTACCAAAAGAGATTTTTTGGTTGATCATAGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATTGGGAGGAATAGTCAACCCAGTAAAATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGAAATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCAGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGGGCCTATGCCTGATGGATTAGTTAACGAGCATCCATTTCGACCACTACAAACAGATGTATTTGGTCACAATCATCCTATGGTCCCTAATAATTTTCCTGGACAATTGCCACCTGGTGGTATTACTGGACATAATGTCCCAATGCGACCTTTTGGTCCTCAAGGTCTTGAACCTCTTATCTCTGGTCCTGATTTTAATGAGACGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCAGTGCCTGGTATTAGGCCTTCTACAAGATCCACCCCTGGTGCATGGGATGTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTCGAGGGTAGATGACGCTTTGCTCATTGGTGATGCTCCATTTCCTTTAAGGAATATAGATGATCGTGGATTAGGACTAGAACAACCATTTGCAATTGATCCAGTTAATGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTTGGCACTAGGATCATATCTGGAGTACCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGGACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGGACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGCTAACGAAACACTATGCTGATGCAATTGGCTTTGACATAGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTCAAAGCAAAAAACCGTGCTGGTGTTGCCAGGTTTGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTCTTGACCAAGGTTTTGAAGGTCACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTCCATTAGTTCCAAGTAGTACATATATGCAACAAGCAATGCATTTGCCTTCACCCTCTACTCAGTATATGCAACAGATTCCCCCTTCACAAGCTGAGTATGGTTCAATCCCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTGCCAAGACCACTTCATCCAGCTCCAAGTGTCCCCCCTTCAGCTCATTCTGTTCCTCCTGACTATGCTCCTACTTATACTGCTTCTGCATCCCAAGCTGGAGTTACATTGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACTACGCAATCATCAACCACTGGTGGCACAATGGGAGTGGTTGGTCCCTCTACTGTGAAGCCTCATTTTCCTCCTGTTGCACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAATTGCTGATCCATCTAGACATCCTCCTCAACAGTTGGGGAGTATTCATAATGCTCAAGATCAACCTTATCCACCTGCATCTTCTACTGACCACCCTGCTCAAGTGGTCTCTGGCAGTTCTCATTTCCAAGATACCGCTTCCAGTCTTCAGCAGCTAGGTACTGTTTCGTCTACACCCATGACTAATTTCATCATACCTCCTCAAAATGGACAGGTAGCTGTGTCCCCTCAAGTCAGTGAACGGTATCAGGTGGAAGCCCCCCACGGCACTGAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCATTCCAACAACCTAATACCTTTATTTCCTCATCCAACCAAGTTGCCAATGCTGCTTCACAGCAACAATCTGTGATGCCCTATACAGTGGACAAAGTTAATTCAGGGCCCACAAATCAGCAACTTCAACCTGCTTTATTTGGAGTTGGCCAGGGAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCCACCAGATACAACAGCAAACACAAGGAGGGCATGGGCCAGCAAATCAACAATAA 2841 0.4512 MPLPSKSGEGEEWRSPTNNLWVGNLPPEVTDSDLMELFAPFGSLDTIVSYSSRPFAFVLFRRVDDAKAAKSNLQGASLRGFQIRIEFARPAKPCKQLWVGGFSHAVAREDLEAEFRKFGRIEDFKFFIDRGTACVEFLNLDDAIRAVKVMNGKRLGGGQICVDFLRSQSTKRDFLVDHRQFQARPQHLQPSIGRNSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSIDEAQRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGFYPGGKGPMPDGLVNEHPFRPLQTDVFGHNHPMVPNNFPGQLPPGGITGHNVPMRPFGPQGLEPLISGPDFNETGPNWKRPSPPAPGMLPSPVPGIRPSTRSTPGAWDVLDINQFQRDSKRSRVDDALLIGDAPFPLRNIDDRGLGLEQPFAIDPVNDGGGSGPKSHLGPVGTRIISGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKAKNRAGVARFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTYMQQAMHLPSPSTQYMQQIPPSQAEYGSIPVKEEQVLPMDYNRLLHEDSKHLPRPLHPAPSVPPSAHSVPPDYAPTYTASASQAGVTLTPELIASLTSLLPATTQSSTTGGTMGVVGPSTVKPHFPPVAPNDGNQSHLWKQDQQIADPSRHPPQQLGSIHNAQDQPYPPASSTDHPAQVVSGSSHFQDTASSLQQLGTVSSTPMTNFIIPPQNGQVAVSPQVSERYQVEAPHGTEKGYGVVQGTDASVLYSSKAFQQPNTFISSSNQVANAASQQQSVMPYTVDKVNSGPTNQQLQPALFGVGQGVSELEADKNQRYQSTLQFAANLLHQIQQQTQGGHGPANQQ 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04095 946 MobiDBLite consensus disorder prediction 735 792 - -
Pumo4g04095 946 CDD RRM_SF 97 163 - -
Pumo4g04095 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Pumo4g04095 946 MobiDBLite consensus disorder prediction 651 677 - -
Pumo4g04095 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Pumo4g04095 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Pumo4g04095 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Pumo4g04095 946 SUPERFAMILY RNA-binding domain, RBD 12 92 IPR035979 GO:0003676
Pumo4g04095 946 Coils Coil 915 935 - -
Pumo4g04095 946 MobiDBLite consensus disorder prediction 705 792 - -
Pumo4g04095 946 CDD RRM_SF 20 86 - -
Pumo4g04095 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Pumo4g04095 946 Gene3D - 93 191 IPR012677 -
Pumo4g04095 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 88 - -
Pumo4g04095 946 FunFam flowering time control protein FPA 194 286 - -
Pumo4g04095 946 Pfam SPOC domain 468 585 IPR012921 -
Pumo4g04095 946 Gene3D - 5 92 IPR012677 -
Pumo4g04095 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Pumo4g04095 946 FunFam Flowering time control protein FPA 10 92 - -
Pumo4g04095 946 FunFam Flowering time control protein FPA isoform A 93 193 - -
Pumo4g04095 946 SUPERFAMILY RNA-binding domain, RBD 185 273 IPR035979 GO:0003676
Pumo4g04095 946 CDD SPOC_FPA-like 473 593 - -
Pumo4g04095 946 SMART rrm1_1 201 269 IPR000504 GO:0003723
Pumo4g04095 946 SMART rrm1_1 19 86 IPR000504 GO:0003723
Pumo4g04095 946 SMART rrm1_1 96 163 IPR000504 GO:0003723
Pumo4g04095 946 SUPERFAMILY RNA-binding domain, RBD 92 172 IPR035979 GO:0003676
Pumo4g04095 946 Gene3D - 192 277 IPR012677 -
Pumo4g04095 946 MobiDBLite consensus disorder prediction 657 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04095 Pumo-Chr4 81641369 81654382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04095 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 27.322 2.02e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04095 - - gmx:100806555 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04095 4 81641369 81654382 Pumo4g04095 4 81641369 81654382 ECH
Pumo4g04095 4 81641369 81654382 Pumo11g01706 11 48687372 48694254 PCT