Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04089 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCCGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTGCTTCTTCAATGTCTATCAAGCAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCCGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCCTCAAGTTCCAATTGCACCAAAGACAATGAAAAAAGTCACTTGGAGCCTCCTAATAGGAATGCACAAGAAGTTTCCGCGAAAATTCCTCCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTGCAGTTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTGCTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTCATAACAGTAGCAGTGTTGCTTCATACAGAACCTCCAAGTCCTACATGTCCCACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTATTTTACTGTGCCTGATCTTGGCTAA 723 0.4481 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHLEPPNRNAQEVSAKIPPQQVPSFTSSWAVDDLLELTGFESPEKKESLQFGELEWLTDVGIFGEQFAQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSHKKPRIEVLNDDDDDEYFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04089 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo4g04089 240 CDD Bbox1_BBX-like 5 47 - -
Pumo4g04089 240 MobiDBLite consensus disorder prediction 108 131 - -
Pumo4g04089 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pumo4g04089 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo4g04089 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pumo4g04089 240 Gene3D Classic Zinc Finger 1 96 - -
Pumo4g04089 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Pumo4g04089 240 CDD Bbox1_BBX-like 57 98 - -
Pumo4g04089 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pumo4g04089 240 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04089 Pumo-Chr4 81600785 81603516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04089 1 161 Orphan Transcription Factor Family AT1G06040 64.286 1.40e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo4g04089 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04089 - - gmx:100797515 462.225