LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g04084	ATGAACCTATGGCCAGTTCTATTTGGGACTCTATTTGAGGTTGTGGTTTTTTCATGCTTGTTGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCGTCTCTTATGGCGACAAAGGGTCTGTGTTTTGTGGCTTGAAATCAGATGGATCTCACACTGTGACCTGTTATGGAATAAACTCAGCCATAATTTATGGAACACCAACGCACTTTCCATTCCTTGGTCTAACCGGTGGTGATGGCTTTGTGTGTGGGCTTCTAATGAGTTCTAGTCAACCATATTGCTGGGGCAGCAGTGGCCATGTTGAAATGGGTGTGCCACAACCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCTGGGGACTATCACGTTTGTGGATTGAGGAAACCATTGACTGGAAAACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACCAATAACTATGTGTTTGATGGGCAGGTTCAGTCAATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCTCAGAATAGGACTGTGTTCTGTTGGGGGGATGAGACTAGTAGCCAAGTGATTAACATGATCCCTCAAGGCATGAGGTTCCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGCATCTTAGAAGGTGTGAATTCTAGAGCTGTTTGTTGGGGGAGGAGCTTGTTGGATTTGGGGGAAGAACTTTCAATTTCATTGACACGTCCAGGACGAGGACAAGGTAATGTTGAATTGGCTCCAAATGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGATCGTGGAGTGGTTTGTTGGGGCTATAGTTTGAAAGCAGGCACCCCAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTATTTTACCTGTGGAATACTTGTTGAGAAATCTCTTATGCCTGTTTGTTGGGGTGTTGGCTTCCCTACCTCTCTCCCATTGCCTGTTTCACCAAGAATGTGTAGGTCTACTCCATGTGCTCCAGGTTACTATGAAACCCAACAAAATGGTCTTTGCAAGGCCCCAGATTCTCACATTTGCATGCCTTGCAGTGCTGCTTGTCCTCGTGAGATGTATCAGAGAAGTGGATGCAACTTGAAATCTGACATACTATGTGAATATAATTGTTCTATTTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTCTGGCAAGAGAAGTGAAAGATTTTGGTCTCTACAGCTGCCAGTGGTTATTGCTGAGATAGCTTTTGCTGTTTTCTTAGTTAGCATTGTGTCTATAACTGCTGTTTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCAGGGTCAAAGGTGAAGAAACTAAAAGGGAGCTCTTCAAACCAAAAGGAGAAATGCAAGATCCGACCAGACTTGGAGGAGTTCAAGATTAGGAGGGCACAGATGTTCCCCTATGAGGAACTTGAAAGGGCAACTAGTGGATTCAAAGAAGAGTCCATAGTGGGGAAGGGAAGTTTTTCATGTGTGTTCAAAGGGGTTCTCAAAGATGGGACTGTTGTTGCTGTTAAAAGGGCCATAGTATCTCCTAACATGCAGAAGAATTCCAAGGAGTTTCACACCGAGCTTGACTTGCTCTCTAGGTTGAACCATGCACACTTGCTCAATCTACTAGGCTACTGTGAAGAAGGTGGAGAAAGGCTCCTAGTTTATGAGTACATGGCTCATGGATCTTTGCATCAACACCTGCATGGGAACAAGGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTAACAATTGCAGTGCAAGCAGCTCGCGGAATCGAATATTTGCATGGATATGCTTGTCCACCCGTGATTCACAGAGACATTAAGTCTTCAAACATCCTCATTGATGAAGAACACAATGCTAGAGTGGCTGATTTTGGTTTGTCACTACTTGGTCCTGCAGATAGTAGCTCTCCACTAGCTGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTACAGGCTTCATTATCTTACCACAAAGTCTGATGTATACAGCTTTGGTGTTCTACTTTTGGAGATTCTAAGTGGTAGAAAAGCCATTGACATGCAATATGAAGAAGGGAACATAGTTCAATGGGCAGTGCCTTTGATCAAATCAGGAGATATAGCTGCAATTTTGGATCCAGTTTTGAAACCTCCTCCTGATCTTGATGCCTTGAGAAGGATAGCTAATGTGGCTTGTAAAAGTGTGAGAATGAGAGGGAAGGATAGGCCATCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTCTTGCACAGTTAATGGGGAGCCCTTGTATTGAGCAGCCAATTTTGCCCACTGAGGTGGTTTTGGGAAGTAACAGATTGCACAAGAAATCATCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAGGATCAGAGGTTTGAATTTAGAGCACCCTCATGGATTACTTTCCCCAGTGTCACTTCTTCTCAAAGAAGATCAGGCTCAGAGGCTGATGCTGAGGGCAAAAATGCAGAAGGGGGGAATTTGAGCAATGTTGGAGGTGGTGGTGGTGGTGTTTTGAGAAGTCTTGATGAAGAGATTGGTCTTGCCTCTCCTCGAGAGAGACTTTTCTTGCAACACAACTTCTAA	2703	0.4454	MNLWPVLFGTLFEVVVFSCLLLQVSSLGSMSSIAVSYGDKGSVFCGLKSDGSHTVTCYGINSAIIYGTPTHFPFLGLTGGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGKHRNTSLVDCWGYNMTNNYVFDGQVQSISAGSQFNCGLFSQNRTVFCWGDETSSQVINMIPQGMRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTRPGRGQGNVELAPNDPMLSVVGGKFHACGIKSYDRGVVCWGYSLKAGTPVPSGIKAFEIGAGNYFTCGILVEKSLMPVCWGVGFPTSLPLPVSPRMCRSTPCAPGYYETQQNGLCKAPDSHICMPCSAACPREMYQRSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAASGKRSERFWSLQLPVVIAEIAFAVFLVSIVSITAVLYVRYKLRDCQCSGSKVKKLKGSSSNQKEKCKIRPDLEEFKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIAAILDPVLKPPPDLDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADAEGKNAEGGNLSNVGGGGGGVLRSLDEEIGLASPRERLFLQHNF	900

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g04084	900	SUPERFAMILY	RCC1/BLIP-II	250	336	IPR009091	-
	Pumo4g04084	900	Gene3D	Phosphorylase Kinase; domain 1	480	586	-	-
	Pumo4g04084	900	ProSiteProfiles	Protein kinase domain profile.	509	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04084	900	SUPERFAMILY	Protein kinase-like (PK-like)	491	781	IPR011009	-
	Pumo4g04084	900	FunFam	serine/threonine-protein kinase-like protein CCR1	479	586	-	-
	Pumo4g04084	900	Gene3D	Transferase(Phosphotransferase) domain 1	587	791	-	-
	Pumo4g04084	900	SUPERFAMILY	RCC1/BLIP-II	26	229	IPR009091	-
	Pumo4g04084	900	Pfam	Protein kinase domain	509	725	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04084	900	MobiDBLite	consensus disorder prediction	844	875	-	-
	Pumo4g04084	900	Pfam	Regulator of chromosome condensation (RCC1) repeat	161	191	-	-
	Pumo4g04084	900	ProSitePatterns	Protein kinases ATP-binding region signature.	515	537	IPR017441	GO:0005524
	Pumo4g04084	900	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	343	390	IPR001368	GO:0005515
	Pumo4g04084	900	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	633	645	IPR008271	GO:0004672\|GO:0006468
	Pumo4g04084	900	SMART	serkin_6	509	756	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g04084	900	FunFam	Receptor protein kinase CRINKLY4	587	788	-	-
	Pumo4g04084	900	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	13	900	-	-
	Pumo4g04084	900	Gene3D	-	73	347	IPR009091	-
	Pumo4g04084	900	FunFam	Serine/threonine-protein kinase-like protein CR4	26	193	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g04084	Pumo-Chr4	81549091	81552079	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g04084	11	900	Receptor kinase-like Gene Family	AT3G59420	67.257	0.0	1215

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Pumo4g04084		Pkinase	3.2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g04084	-		-	gmx:100807392	1706.03