Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04072 ATGGATTCCGAGGACGATATGCACGACGCCAATGATGTCGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCATGGATTACTACAGTGACTACGACGACGACGCCGATGATTACTTCGACGATGCTGACGATTCTGACCGGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACCATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAAGATGACATCACTAGAGTAGCCGCAGTTCTTTCCATACCGCGGGTTTCTGCGAGCATCCTACTTCGTCACTACAATTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATCCTAGAGAGCTTATTTGTGGCATCTGTTTTGAAACGTATCCTCGTGCACGGGTTGAATCTGCTGCCTGTGGTCATCCTTACTGCTTTTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCTGGATGTTTGGTGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGAAAAGTATGATCGTTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAACTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGCTTCTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACATCTATTCCTCAATGCTGATGGCCCATCTAGAGAATTCAATGACTTTCGTACCAAACTAGCATGGATTGACCAGGTAGATGTTGTTCTTGTTTTTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGTAATGGAGCTGCTTCTAGCAAAGCAACGAGCTCAAAAAATGTTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTATTCGAACTAGCATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGTACTTATGCAAATGTTAGGTCTGCCACCACATGCCAAATGTGCAATCAACAGCGTCGATGA 1794 0.4409 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDADDYFDDADDSDRIESRRPEQNFTILRELDIRQRQEDDITRVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNPRELICGICFETYPRARVESAACGHPYCFSCWAGYIGTSINDGPGCLVLRCPDPTCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELHLFLNADGPSREFNDFRTKLAWIDQVDVVLVFVTRNYFENLVRALENGLADVDSNGAASSKATSSKNVAGSSKGRGGRGKATIRTSISSRMTDDNHWSCEHCTYANVRSATTCQMCNQQRR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04072 597 FunFam RBR-type E3 ubiquitin transferase 271 528 - -
Pumo4g04072 597 SMART zf_4 571 595 IPR001876 -
Pumo4g04072 597 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Pumo4g04072 597 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Pumo4g04072 597 CDD Rcat_RBR_ARI7-like 293 347 - -
Pumo4g04072 597 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Pumo4g04072 597 SUPERFAMILY RING/U-box 134 220 - -
Pumo4g04072 597 SUPERFAMILY RING/U-box 289 337 - -
Pumo4g04072 597 SMART ibrneu5 283 344 IPR002867 GO:0008270
Pumo4g04072 597 SMART ibrneu5 208 270 IPR002867 GO:0008270
Pumo4g04072 597 MobiDBLite consensus disorder prediction 1 48 - -
Pumo4g04072 597 MobiDBLite consensus disorder prediction 530 547 - -
Pumo4g04072 597 Gene3D - 567 597 - -
Pumo4g04072 597 SUPERFAMILY Ran binding protein zinc finger-like 569 596 IPR036443 -
Pumo4g04072 597 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
Pumo4g04072 597 Pfam Ariadne domain 357 479 IPR045840 -
Pumo4g04072 597 MobiDBLite consensus disorder prediction 530 563 - -
Pumo4g04072 597 CDD BRcat_RBR_ANKIB1 215 279 - -
Pumo4g04072 597 SUPERFAMILY RING/U-box 208 277 - -
Pumo4g04072 597 MobiDBLite consensus disorder prediction 1 51 - -
Pumo4g04072 597 ProSiteProfiles Zinc finger RanBP2 type profile. 569 597 IPR001876 -
Pumo4g04072 597 Gene3D - 266 527 - -
Pumo4g04072 597 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Pumo4g04072 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Pumo4g04072 597 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Pumo4g04072 597 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04072 Pumo-Chr4 81450740 81457597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04072 17 596 ARIADNE family AT1G65430 70.068 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04072 K11968 - gmx:100810427 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04072 4 81450740 81457597 Pumo4g04072 4 81450740 81457597 ECH
Pumo4g04072 4 81450740 81457597 Pumo11g01681 11 48487858 48496736 PCT