Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04049 ATGGAGTCAGATCTCGAGCAGCAGCCGCAGGTGAATTCCTCGGGTTTAACTCGGTACCGATCGGCGCCGAGTTCTTATTTCTCGAACATCATTGACCGCGAGTTCTACGAGCACATTTTCAACCGACCATCGAGTCCCGAAACGGAGCGAGTGTTCTCACGCTTCATGAACAGCTTAAGCAGCGAAGAAGATTCGCTCCATCAGAAACTCTCAACTGATTCTTCTTCTGCGGTCAAGGAAGAGGTTAACCAACAAGAGCAGAACGTGGCGGCGCTACAGCAGAGTAATAACAACATCAATAATTATAACTCTGCTTCTCATAATTTCTATCAAAGCTCCTCCTCCTCCTCCTCCAAACCACCCTTGCCGAACCAGAACCAGAACCTGACCTCAGGTATGGAACAAGGAACGTATTCAATGGGACTCAGGCATAGTGGTGGAAATAATTCTAACCTTATAAGGCATAGTAGCTCTCCAGCTGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTAGCGTGAGAGGCATGGGGACTTTGGGGGCTGTTAATAACAGTGTGGAAGATGCGAAATTTTCTAGTTCGAGGAGGTTGAAGAATCAACCCAATTATTCTTCGTCGGGGCGAATGTCGTCCATTGCTGAAATTGGGGACAAAGGGAATAGAGAAACTAGTCCAGACAATGAAGCTTTTGCTGATGGTAACGATTTTATGACTGGTTTCCAAGTTGGTCATTGGGATGATACTACTACTGCAATGATGTCTGACAACGTTGGTGGTCTCAAAAGATTTAGAGAAAACGATTCAAAACCATTTTCTGGTGTAAATGCACCTGATACTCAGAATGAAACGGGGCAGACTCCTGCTCCTTTGGCCCATCACTTGAGTTTGCCAAATACTTCAGCTGAAATGGCTGCCATCGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAAGATCTTGTCCCAAACATGGACAAGCAAACTAACACAGCTGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGACGCTTTCAGACTGCCATGCTAAGTGTACGTGTTCACACGAGAAGCAACAATAA 1203 0.4497 MESDLEQQPQVNSSGLTRYRSAPSSYFSNIIDREFYEHIFNRPSSPETERVFSRFMNSLSSEEDSLHQKLSTDSSSAVKEEVNQQEQNVAALQQSNNNINNYNSASHNFYQSSSSSSSKPPLPNQNQNLTSGMEQGTYSMGLRHSGGNNSNLIRHSSSPAGLFSQINIENVYASVRGMGTLGAVNNSVEDAKFSSSRRLKNQPNYSSSGRMSSIAEIGDKGNRETSPDNEAFADGNDFMTGFQVGHWDDTTTAMMSDNVGGLKRFRENDSKPFSGVNAPDTQNETGQTPAPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDCHAKCTCSHEKQQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04049 400 MobiDBLite consensus disorder prediction 274 290 - -
Pumo4g04049 400 Gene3D - 329 399 IPR036638 GO:0046983
Pumo4g04049 400 Pfam Helix-loop-helix DNA-binding domain 333 379 IPR011598 GO:0046983
Pumo4g04049 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 378 IPR011598 GO:0046983
Pumo4g04049 400 MobiDBLite consensus disorder prediction 101 153 - -
Pumo4g04049 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 392 IPR036638 GO:0046983
Pumo4g04049 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 397 - -
Pumo4g04049 400 MobiDBLite consensus disorder prediction 271 293 - -
Pumo4g04049 400 SMART finulus 334 384 IPR011598 GO:0046983
Pumo4g04049 400 FunFam Transcription factor bHLH130 family 329 398 - -
Pumo4g04049 400 Coils Coil 75 102 - -
Pumo4g04049 400 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04049 Pumo-Chr4 81200373 81204066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04049 7 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.454 5.63e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g04049 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04049 - - gmx:100806368 687.952