Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04048 ATGGATTCTTCTGCTGTCGTGGGTAGCACAATTTCAGAGCCTCATAATGATATGGAATTTGAATCTCATGAAGCGGCATATGCATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGTTGAGCAGTCGGCGGTCTAGGGCATCAAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATACGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCAAGCATGCATGTGAAGAGAAGGCAAGATGGTAAATGGTATGTCTATAGCTTTGTGAGGGAGCATAATCATGAGCTTTTACCAGCTCAAGCTCACTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAAGTAATGATGTTCGAATGCGAAGGCGGAAGAACTCAAATGCAGTTTCTAAATTATTTACTGCATATCAAAATGTTGATTGCTTAGAGAACTTCGTGAAACATCAACATGATAGAGGACGAAGTTTGGTTCTAGAAGCAGGACATGCTCACTTGCTTCTTGAACTCTTCATGCACATGCAGGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTACTTATTTTTCTGATGTTGTTTCTTTTGACACAACATATTTTACAAGCAAATATAAAATACCATTGGTACTGTTCATTGGAGTAAACCATCATATTCAACCGACATTGCTTGGTTGTGCATTGATTGCTGATGAGACAATATATACTTTTGCCTGGTTACTGCAAACATGGCTCATAGCAATGGGGGAACGAGCTCCACAAGTGCTTCTCACTGACCAAAACGAGGCTATTAAAGCAGCTGTTGCTGCTTTTCTTCCAGGAACACGTCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAAACAACTGGAATTTTTAGGTGCGTGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGACAGAGGAGCAATTTGATAAGAGATGGTGGGAGTTGGTTGATGACTTTAACCTTAGAGATGTTGAGTGGGTTCAATCCTTATATGATGATCGTACATGTTGGGTGCCAACTTTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCACGCTCAGAAAGTTCAAATTCATTGTTTGACAACTATATCCAAATTGATACTTCATTGAGAGAATTTATAGAACAGTATAGAGTGATTCTTGAAGATAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAGCAAATGTTGTTAGTTTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTTTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAATGATGGTGTGACTACTACTTATACTGTGAAAGACTTTGAAAATAATCAAAACTATATGGTAGAATGGAACACATCAACCTCAGATATATGTTGTTCATGTCATTTGTTTGAATATAAAGGTTATCTCTGTAGACATGCTGTTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGACGGGCCATAATATTAGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTATATGGCTTTAGGTGCCATAAGTGAGGCACTAAAGCAATGTGCAAATTTGACCAACTCTGTTGAGAATGGTATGAGACCTGATGCCTCAGGTACCCATGTTGTTTGTAATGTTGAAGAAAAATATCAATCTATTATTACATCTAACAATAAGGTCCCTGATCCAAAACTGAATACGGGAAAGAAAGCTGTGAGGACTGGTATGGCTGGTAGGAGTCTAGGAAGTGTTGAAAACAGTGAAGGAAATAAAGGAAAGGTATCTCATGTCGAAGCAGGTAGTGGGAAAGATGGTTTTCAACAAATGGAGCTGACTGATCCGAGATCACACAGTGTCATGCCAATGCAGTTTCACAGTGTGGTACCCGCTCTGTTCCATAATGTTTCGTCACCATTTCATACTGCACCTTCAACTCATTTGCACGAGAATTGTTAG 2232 0.3849 MDSSAVVGSTISEPHNDMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVREHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSNAVSKLFTAYQNVDCLENFVKHQHDRGRSLVLEAGHAHLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFTYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPTLLGCALIADETIYTFAWLLQTWLIAMGERAPQVLLTDQNEAIKAAVAAFLPGTRHCFCLWHILEKIPKQLEFLGAWHDSFMEKFNKCIYKSWTEEQFDKRWWELVDDFNLRDVEWVQSLYDDRTCWVPTFMKDISFAGLSTSSRSESSNSLFDNYIQIDTSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKENDGVTTTYTVKDFENNQNYMVEWNTSTSDICCSCHLFEYKGYLCRHAVVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGAISEALKQCANLTNSVENGMRPDASGTHVVCNVEEKYQSIITSNNKVPDPKLNTGKKAVRTGMAGRSLGSVENSEGNKGKVSHVEAGSGKDGFQQMELTDPRSHSVMPMQFHSVVPALFHNVSSPFHTAPSTHLHENC 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04048 743 SMART 26again6 517 544 IPR006564 GO:0008270
Pumo4g04048 743 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Pumo4g04048 743 Pfam MULE transposase domain 227 320 IPR018289 -
Pumo4g04048 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 616 IPR031052 GO:0006355
Pumo4g04048 743 Pfam SWIM zinc finger 512 540 IPR007527 GO:0008270
Pumo4g04048 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Pumo4g04048 743 MobiDBLite consensus disorder prediction 667 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04048 Pumo-Chr4 81174146 81180223 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo4g04048 MULE 2.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04048 - - gmx:100805273 1461.05