Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04043 ATGAGTCAATGCGTTGCTTGCATGTACCAAGGGAAACCCTGTCTCCTGGGCTGCCTCAAACGTCGATACTTTCGACACACAACACGGCGACAGTTTATCGATTTTCACACCGTCTTCGGGGCTTCCAGGTTGAATGGTTTACTAAACATGGCGTCGGCCGAAGATCCCATTCATCGTCAGACTGTAACGTATCTGATCAAAGAAGCCAAGATTCGTTGTCAAGACCCAATGGGAGGCACTGCTGCCAAAATTGATAGACTTCGTCAAACGATTGCTAATCTTAGGGCACAACTCGCTGCCTCCAAGGCGAGGATCCAGCGCTAG 324 0.4969 MSQCVACMYQGKPCLLGCLKRRYFRHTTRRQFIDFHTVFGASRLNGLLNMASAEDPIHRQTVTYLIKEAKIRCQDPMGGTAAKIDRLRQTIANLRAQLAASKARIQR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04043 107 Pfam Lateral organ boundaries (LOB) domain 3 101 IPR004883 -
Pumo4g04043 107 Coils Coil 84 107 - -
Pumo4g04043 107 ProSiteProfiles LOB domain profile. 2 105 IPR004883 -
Pumo4g04043 107 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 105 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04043 2 105 AS2 family AT3G11090 32.692 2.27e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g04043 LOB 9.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04043 - K13945 ini:109161156 63.929