Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04042 ATGGCGGAGGAGCTGAACCTCGACAACCTGAAACCACTGAAAGTATTAGGCAAAGGAGCCATGGGCACCGTCTTCCTCGTCCAATTACACAACTCCTGCCACGTGGCACTCAAAGTCGTAGACAAATCAACCTCCCTCCACGACGCACCTCGCCGCGCCCGTTGGGAAATGAACGTCCTCTCACGCTTATCCCACCCCTTCCTCCCTTCCCTATTGGGCTCCTTCGAGTCCAACAACTTAATGGGCTGGGCCGTCCCTTACTGCCCCGGCGGTGACCTCAACGTCCTCCGGTACCGCCAAACGGATCACGTGTTCTCCCCCGCCGTCATCCGGTTCTACGTGGGCGAGATCCTCTGCGCGCTGGAACACCTCCATTCCATGGGCATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAGCAATCCGGACACGTCACCCTCACCGACTTCGACCTCTCCCGAACCCTCTCTCCCAAAAAAACCATCCAAAACAACAACAACAACAACGTTCTTCTCTCCCTCCAAGATACTACCACTCCCCGAAAACACCGCCGCTGGGTCCCACTCCACGCTAACAAAAACAACCCCAAGCCCGCCCGAGTCAGCCCCGTGAATCGGCGCAAACTCAGTTTCGAACGCTCCAACTCGTTCGTCGGCACCGAGGAGTACATCGCGCCGGAAGTCCTCCGCGGCCAGGGGCACGAGTTCGCCGTCGACTGGTGGGCCCTCGGAGTTCTCACCTACGAGATGCTCTACGGAACGACGCCGTTCAAGGGAAAGAATCGCAAGGAGACGTTCCGAAACCTGCTGCTGAAGGCGCCAGAGTTTGTGGGGAAGAAAACGGCGTTGACGGACCTCATCTCTCGGTTACTTGAAAAGGACCCCACCAAGCGTTTGGGTTACGTTCGAGGCGCTAGCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTCAAGTGGGACCTACTAACGGAGAGACGACGCAACAACAACCAAGTCTTTCGCTGCTGGACTCGACATAAGGGGATACTTTCAGAGCTTGAAATCCCCGCCGTCTTTGCCCCCTTCGCCGTTACGGTCACCGTCCTTTCAGTTTCAGAAGAATGTTTCTTTACCAGAATTCTGACGCACGTGTGGGGAATCGTAGCCTTCCACTTTGATGTTCAAGGTACAATTTGA 1182 0.5626 MAEELNLDNLKPLKVLGKGAMGTVFLVQLHNSCHVALKVVDKSTSLHDAPRRARWEMNVLSRLSHPFLPSLLGSFESNNLMGWAVPYCPGGDLNVLRYRQTDHVFSPAVIRFYVGEILCALEHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRTLSPKKTIQNNNNNNVLLSLQDTTTPRKHRRWVPLHANKNNPKPARVSPVNRRKLSFERSNSFVGTEEYIAPEVLRGQGHEFAVDWWALGVLTYEMLYGTTPFKGKNRKETFRNLLLKAPEFVGKKTALTDLISRLLEKDPTKRLGYVRGASEIKEHEFFRGVKWDLLTERRRNNNQVFRCWTRHKGILSELEIPAVFAPFAVTVTVLSVSEECFFTRILTHVWGIVAFHFDVQGTI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04042 393 PANTHER FLIPPASE KINASE 1-RELATED 4 325 - -
Pumo4g04042 393 SUPERFAMILY Protein kinase-like (PK-like) 7 348 IPR011009 -
Pumo4g04042 393 Gene3D Phosphorylase Kinase; domain 1 10 91 - -
Pumo4g04042 393 ProSitePatterns Protein kinases ATP-binding region signature. 16 38 IPR017441 GO:0005524
Pumo4g04042 393 ProSiteProfiles Protein kinase domain profile. 10 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04042 393 SMART serkin_6 10 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04042 393 Pfam Protein kinase domain 216 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04042 393 Pfam Protein kinase domain 13 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04042 393 FunFam Serine/threonine-protein kinase OXI1 214 332 - -
Pumo4g04042 393 FunFam Serine/threonine-protein kinase OXI1 92 160 - -
Pumo4g04042 393 Gene3D Transferase(Phosphotransferase) domain 1 212 330 - -
Pumo4g04042 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Pumo4g04042 393 Gene3D Transferase(Phosphotransferase) domain 1 92 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04042 Pumo-Chr4 81101633 81103689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04042 3 326 AGC Kinase Gene Family AT3G20830 61.696 2.45e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo4g04042 Pkinase 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04042 - K08286 gmx:100802613 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04042 4 81101633 81103689 Pumo4g04042 4 81101633 81103689 ECH
Pumo4g04042 4 81101633 81103689 Pumo11g01661 11 47997158 47998421 PCT