Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04039 ATGGGAGCTGGTTGTTCTAAATTGTGTCTATGCTGGTGCCCCTCCAGCTCCAAATCCAATCTTCATGACTTACCTGATAATGAGAATGGGAACGAGGGTGAGAAGAAGGATTCCTGGGTTGGCTTCACCGAGTTCACCTTGGATCAACTGAGAAGTGCCACGTCAGCATTTTCACCCGACAACATAGTCTCAGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGAAGAATTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATCCTCGACAGTTCCTAGAGGAAGCAAGGGCAGTGGGGCAGCTGAGGAATGAGAGGTTGGCTAACTTGGTTGGGTGTTGTTGTGAAGGAGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCCAATGAAACTCTTTCCAAACATCATCTTTCACTCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATTTAGCACAAGCATTGGAATACTGCAGCAATAAAGGAAGAGCATTGTATCATGATCTTAATGCTTACAGAGTTTTGTTTGATCAGGATGGAAACCCTAGGCTGTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACCCCACCTGAGTATTTGAGGACAGGAAGAATCACCCCAGAAAGTGTAATCTACAGTTTTGGCACACTCTTGCTTGATCTTCTGAGTGGCAAGCATATTCCACCCAGTCATGCACTTGACCTAATACGAGGCAAAAACTTTCTGATGCTGGTGGACTCATGTTTGGAAGGTCATATTTCAAATGATGATGGAACTGAGATAGTGAGATTAGCTTCACGCTGTTTACAGTATGAGCCTCGCGAGAGGCCAAACGCCAAATCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGAAACTTCAGTTCCATCACAAGTTTTGTTGGGCATACCAGATGAGAGTGCCCCATCAAAGGAAGAAGTTCCATTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGATCTCACTTCAATATATGAAATTTTGAAAACGGTGGGATACAAGGATGATGAAGATGTAGCGAATGAGCTTTCCTTCCAGGTGTGGACAGACCAAATACAAGAAACACTAAATTCTAAGAAGCAAGGAGATTCTGCTTTCCATGCCAGAGACTTCTCTAAGGCCATTGAGTGCTATACACAAGTAAGTCAGCTAGAAATGCGTGGAACATGA 1260 0.4413 MGAGCSKLCLCWCPSSSKSNLHDLPDNENGNEGEKKDSWVGFTEFTLDQLRSATSAFSPDNIVSEHGEKAPNVVYKGRIEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHHLSLQPMKWAMRLRVALYLAQALEYCSNKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLVDSCLEGHISNDDGTEIVRLASRCLQYEPRERPNAKSLVTALTPLQKETSVPSQVLLGIPDESAPSKEEVPLTPFGEACSRRDLTSIYEILKTVGYKDDEDVANELSFQVWTDQIQETLNSKKQGDSAFHARDFSKAIECYTQVSQLEMRGT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04039 419 Gene3D Transferase(Phosphotransferase) domain 1 137 327 - -
Pumo4g04039 419 SUPERFAMILY Protein kinase-like (PK-like) 38 315 IPR011009 -
Pumo4g04039 419 FunFam probable serine/threonine-protein kinase At5g41260 137 326 - -
Pumo4g04039 419 Pfam Protein tyrosine and serine/threonine kinase 74 309 IPR001245 GO:0004672|GO:0006468
Pumo4g04039 419 ProSiteProfiles Protein kinase domain profile. 60 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g04039 419 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Pumo4g04039 419 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
Pumo4g04039 419 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 18 411 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04039 Pumo-Chr4 81072759 81076577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04039 27 309 Glycoside Hydrolase AT3G07070 32.268 1.23e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Pumo4g04039 PK_Tyr_Ser-Thr 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04039 - - gmx:100804210 788.489