Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04036 ATGACTCATCCCTACTGCTCCAATGACTTCAATGCTTTCTTTGACCTCAATTCTCCATGCCTTTTTTCCACTTCTTCATCACCTTGCTCCAATAACTCACCATTTTATTTTCCTACTAGTAATTACCATCATAATAACTGCACAAATGGCATCTCTTTTACACAGCATCATCAATCTTCTCCCTCCTTTCCTCCTCCAAGAGAAGCACTTCCTCTCCTTAACCTAAGCCCTGCAAGAGGTGAATATCTTGAATCTTCCTTTAGTGCCATGAAAGTCAACAAAGAACTAAGCATGTCATCTAATAATAACTCTTTGGGTGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACTAGTAGTACTACTTCAGCTGATTTAACTTCAAACATATACTCAGACAAAGAAGAAAAAGTCACGGTTGCTTCTGAGTATTCTCCTACTAGAATTAATAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTGCACCGGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGATTTTAGGACCCTCCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGACTGGAGGACTCACGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAAAGATCTCTCAAAGATCATATCAAGGCATTTGGGAATGGACATAGAGCTTATGGAATCGACTCATGTCTTGATCAAGATGATGAAGCTGGCTCTGAAATTGAGCAAGAAAATAATGAATCTTTAATTTCCAGTCATAGTGTTAGTTGA 1029 0.4159 MTHPYCSNDFNAFFDLNSPCLFSTSSSPCSNNSPFYFPTSNYHHNNCTNGISFTQHHQSSPSFPPPREALPLLNLSPARGEYLESSFSAMKVNKELSMSSNNNSLGDETVTVALHLGLPSTTSSTTSADLTSNIYSDKEEKVTVASEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRAYGIDSCLDQDDEAGSEIEQENNESLISSHSVS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04036 342 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Pumo4g04036 342 Gene3D Classic Zinc Finger 172 195 - -
Pumo4g04036 342 FunFam Zinc finger protein WIP2 226 308 - -
Pumo4g04036 342 PANTHER ZINC FINGER PROTEIN WIP2 38 333 IPR043584 GO:0003700|GO:0010468
Pumo4g04036 342 Gene3D Classic Zinc Finger 215 305 - -
Pumo4g04036 342 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Pumo4g04036 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04036 Pumo-Chr4 81052716 81055032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04036 1 329 C2H2 Transcription Factor Family AT1G51220 60.632 3.00e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g04036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04036 - - gmx:100801922 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04036 4 81052716 81055032 Pumo4g04036 4 81052716 81055032 ECH
Pumo5g02610 5 71559922 71562835 Pumo4g04036 4 81052716 81055032 ECH
Pumo3g02835 3 49147449 49149997 Pumo4g04036 4 81052716 81055032 ECH
Pumo4g04036 4 81052716 81055032 Pumo11g01655 11 47907164 47909706 PCT