Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04032 ATGAGTTGGAACCCACACATGGAGGTCCGTTACAATAACATCAGCTATCCCTACAGTACAGCGGGAAGCTTTATTGAATATGTTGAAGGTCTTACGTACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTTATACCCTTCAACTACAAGCTTTTACAAATCTGGGCTATCTGAACCAGAGAGTACCTCATACTATCAGGACAGTCATGGTTATGAGGTGAATCATCATGAACCATTGACGGATGAGTATAGAAGACCTTCAGAAAACTCTGCAACAATCAATGAACAGATGGCAACAGTATGCATAGAAAGGGAAGAAAGAGTAAACATTGCCACACCAGACAGTTCTATTGAATGTCCACGAAGACATCATAATAATTCCACTGATAATCAGGTCATTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGTTGGACTGAAAGAACTACTTGAATTAGGCGAGACAGTTGGAACTCAGAGCCGTGGTCTCTCCCAAGAACAGATCTCATCACTTCCAGTTTCTAAGTACAAGTGTGGCTGCTTCTTCTTCAGGAAGAAGTCACGCGATGAGAGATGCGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGAGGATCACTTTGCCATGTAAACATGTCTATCATGCTAGCTGTGGGAACAGATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGGGAGGTGTTTGCCGAGGTGTCAAAACACAAATAA 762 0.4226 MSWNPHMEVRYNNISYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESLYPSTTSFYKSGLSEPESTSYYQDSHGYEVNHHEPLTDEYRRPSENSATINEQMATVCIEREERVNIATPDSSIECPRRHHNNSTDNQVIWEDNIDPDNMTYEVGLKELLELGETVGTQSRGLSQEQISSLPVSKYKCGCFFFRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPMCYREVFAEVSKHK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04032 253 FunFam E3 ubiquitin ligase BIG BROTHER 162 246 - -
Pumo4g04032 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 247 IPR013083 -
Pumo4g04032 253 ProSiteProfiles Zinc finger RING-type profile. 201 241 IPR001841 -
Pumo4g04032 253 SMART ring_2 201 241 IPR001841 -
Pumo4g04032 253 Pfam Ring finger domain 200 241 IPR001841 -
Pumo4g04032 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 247 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo4g04032 253 SUPERFAMILY RING/U-box 196 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04032 Pumo-Chr4 81015770 81019893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04032 5 252 C3H Transcription Factor Family AT3G63530 40.856 1.13e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04032 K19045 - gmx:100793907 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04032 4 81015770 81019893 Pumo4g04032 4 81015770 81019893 ECH
Pumo4g04032 4 81015770 81019893 Pumo11g01654 11 47886265 47891369 PCT