Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04029 ATGGCGACGTCGCATGGGTATCACCAACCATCGACAATCGAGGAAGTCCGAACCCTCTGGATTGGCGATTTACAATACTGGGTGGACGAAGCGTACCTCAGCCACTGCTTCGCTCACACCGGCGAGGTCCTCTCCATCAAAATCATCCGCAACAAGATGACGGGCCAGCCCGAGGGCTACGGCTTTGTCGAGTTCGTCTCCCACGCCGCTGCCGAGAGGGTCCTCCAGACCTACAACGGCACCCAAATGCCCTCCACCGAGCAGACCTTCAGGCTCAATTGGGCCTCCTTCGGCATCGGCGAGCGCAGGCCCGATGCCGGCCCAGAACACTCCATCTTCGTAGGGGATCTCGCCCCCGACGTAACCGACTACCTCCTCCAGGAAACCTTTCGGGCCCATTATCCTTCAGTTCGCGGCGCCAAAGTCGTCACCGACCCCAACACGGGCCGCTCCAAGGGTTACGGCTTCGTTAAGTTCTCTGATGAGAATGAACGCAACCGTGCCATGACTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGCATTAGTGCCGCTACGCCCAAGAAGACCACCGGTGCTTATGCTGCACCCGCGCCTGTACCCAAACCCCTGTATCCGGTTCCGGCGTACACTGCGCCGGTTGTTCAAGTTCAGCCACCGGAGTATGATGTGAATAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTTTCTGTTAAAATTCAGCCTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTTCGGATTTCTTGGGGTAGGACTCTAACAGCTAGACAGGACTTACCTGGTGGCTGGGGACCGCAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCTTATGCTTATGGGGCTGCTCACGATCCTTCACTGTATGCATATGGAGCATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTCTCAGTACATGGGAGTGCCATTTTAGGGCGGTCACTCTGGCAAAAAACCTGTTCGTCATCCTTACAGCAAGCTTAA 1266 0.5261 MATSHGYHQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPSTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTGAYAAPAPVPKPLYPVPAYTAPVVQVQPPEYDVNNTTIFVGNLDLNVSEEELKQNFLQFGEIVSVKIQPGKGCGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLTARQDLPGGWGPQMDPNQWSAYYGYGQGYEAYAYGAAHDPSLYAYGAYAGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTCSSSLQQA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04029 421 Gene3D - 98 198 IPR012677 -
Pumo4g04029 421 Gene3D - 16 96 IPR012677 -
Pumo4g04029 421 CDD RRM1_SECp43_like 18 98 - -
Pumo4g04029 421 Gene3D - 217 306 IPR012677 -
Pumo4g04029 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Pumo4g04029 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 177 IPR000504 GO:0003723
Pumo4g04029 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 87 IPR000504 GO:0003723
Pumo4g04029 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Pumo4g04029 421 SMART rrm1_1 111 185 IPR000504 GO:0003723
Pumo4g04029 421 SMART rrm1_1 18 93 IPR000504 GO:0003723
Pumo4g04029 421 SMART rrm1_1 230 297 IPR000504 GO:0003723
Pumo4g04029 421 FunFam Polyadenylate-binding protein RBP47B 16 96 - -
Pumo4g04029 421 CDD RRM2_SECp43_like 109 188 - -
Pumo4g04029 421 SUPERFAMILY RNA-binding domain, RBD 209 330 IPR035979 GO:0003676
Pumo4g04029 421 FunFam Polyadenylate-binding protein RBP47B 98 199 - -
Pumo4g04029 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 97 IPR000504 GO:0003723
Pumo4g04029 421 SUPERFAMILY RNA-binding domain, RBD 102 193 IPR035979 GO:0003676
Pumo4g04029 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Pumo4g04029 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 189 IPR000504 GO:0003723
Pumo4g04029 421 FunFam polyadenylate-binding protein RBP45 213 308 - -
Pumo4g04029 421 SUPERFAMILY RNA-binding domain, RBD 9 83 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04029 Pumo-Chr4 80980128 80983253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04029 111 296 Eukaryotic Initiation Factors Gene Family AT4G34110 29.319 3.80e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04029 - - gmx:100799421 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04029 4 80980128 80983253 Pumo4g04029 4 80980128 80983253 ECH
Pumo4g04029 4 80980128 80983253 Pumo11g01649 11 47793937 47798480 PCT