Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04028 ATGGCAGCAACTCCTTCCAAATCCTTTCAAACTCCCTCCAAACCCAAACTCCGATCCCAATCCAATCCCAAATCCTCGCCCGCTGTAACCTCCGACACTCCACAAACCCTACATCTTCGCAGATCCACGCGCGCCAAGTCCCTCCACTTCGATGCTCCCAAGCCTCCCCACACACCGCGTGAACTCACGCTCACAACTCCGAAGCGGAGGACTCGACGATCCATCTATTATGTTGAGGAAGGTTCCGGCGAAGATGAAGTCACTACCAGCAAAATTTCAGCTAAAAATAAGGCTCCGGTCGTCGATGCGATGAAGAAGAAGAATGGGAAGGGCTCAATTGAGGTTTCCTTTGCTCCGGTAACGCCGGCTTCATTGGAAAAGACATCTACCAGGAAGAGGGAGGGTGAGGGAGGTGTTGTTACCAGAGCTAAAAGGGGGAAATTGGAGAATAGGGAAAAGAGTGCAAAATTGCCTGAGAGGCGCGTGTATTATAAAAAAGTGGTTTACGATGGAGGCGAGTTTGAATTGGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTAGCTCCGATGACGAAGATCCCGAAATGGAGGAGTGTAGGATGTGTTTTTCCTCAAACGATGAGGTCATGCTCGAGTGTGACGATTGTTTGGGCGGGTTTCATTTGAAATGCTTGAGGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATCTGTGGGTTCTGTGAGGCTCGTAAGATGGGTAAGGAAGTTCAGTTACCAAAGCCTCCGAAGGGTAAGAAATTAGTTAGGACTATGAGGGAGAAGCTCCTTTCCAGTGATCTGTGGGCTGCTCGTATTGAAAGCATATGGAGAGAGGTAGATGGCAACTATTGGTGTCGGGTGCGCTGGTATACAATCCCAGAAGAGACGTCTGTTGGGCGGCAACCTCATAACCTGAGGAGGGAGCTATATCGAACTAATGAGTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAGCAGAGAATGGTGAAGAGTCTGACAGTGACGAAGACTGGAATGTTGACAAGGAATCAGACTCTGATACAGATGATGATGTTGAATATGAAGAAGAAAATATTAAAAATGCACAATCTCAGCCATCAACAAGCCATCACTTAGCTGCAAATTTGCACAAGGGACGGTTCTTTGGACTTCAAAAGATAGGCACAAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCGTCGCTGCCAAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTGACGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGAAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACACTTTTGTGGAGATTAATGGTCTGAAATTAGCATCACCAGAGAATATTTATAAGGTTATATATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCACTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACTGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCTGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGCGCAGCTGAAATAGCAGATTATCGTATGAAGAAGCTAATTTCTAATCCTGATTGTGTTACTGCAGGAAAGGGACTTGTTGGAATGATAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGAGTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCTTCTGTACCAGCAACGGAGAAGTGTTTCCTGGATATGATACTCTCCTGCAAGTTGGCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTCGCCTTTGCGCTGAGAGACTGCAAAGATCTACCATGGCTGTCAAAGTATCTAATGTAG 2562 0.4407 MAATPSKSFQTPSKPKLRSQSNPKSSPAVTSDTPQTLHLRRSTRAKSLHFDAPKPPHTPRELTLTTPKRRTRRSIYYVEEGSGEDEVTTSKISAKNKAPVVDAMKKKNGKGSIEVSFAPVTPASLEKTSTRKREGEGGVVTRAKRGKLENREKSAKLPERRVYYKKVVYDGGEFELGDDVYVKRREDASSDDEDPEMEECRMCFSSNDEVMLECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARKMGKEVQLPKPPKGKKLVRTMREKLLSSDLWAARIESIWREVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNEFADIEMESVLRHCYVMTPKEYAKASNEGDDVFLCEYEYDIHWHSFKRLADIDNEAENGEESDSDEDWNVDKESDSDTDDDVEYEEENIKNAQSQPSTSHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTRDEADWPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDCVTAGKGLVGMIDVEAAIQEMFQAPHIQMMKSCSRVSKIFLTAMVHELYNTGMGETTFEKLAMRVSCFCTSNGEVFPGYDTLLQVGCRLGECRIILCEAGAKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04028 853 SMART BAH_4 231 372 IPR001025 GO:0003682
Pumo4g04028 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 716 IPR027417 -
Pumo4g04028 853 ProSitePatterns Zinc finger PHD-type signature. 200 243 IPR019786 -
Pumo4g04028 853 FunFam Origin recognition complex subunit 1 649 741 - -
Pumo4g04028 853 Pfam PHD-finger 200 245 IPR019787 -
Pumo4g04028 853 Gene3D - 142 389 IPR043151 -
Pumo4g04028 853 SMART PHD_3 199 244 IPR001965 -
Pumo4g04028 853 ProSiteProfiles Zinc finger PHD-type profile. 197 246 IPR019787 -
Pumo4g04028 853 MobiDBLite consensus disorder prediction 378 408 - -
Pumo4g04028 853 MobiDBLite consensus disorder prediction 1 73 - -
Pumo4g04028 853 Gene3D - 648 728 - -
Pumo4g04028 853 FunFam Origin recognition complex subunit 1 263 455 - -
Pumo4g04028 853 FunFam Origin recognition complex subunit 1 453 652 - -
Pumo4g04028 853 Gene3D - 452 647 IPR027417 -
Pumo4g04028 853 CDD BAH_plant_2 220 372 - -
Pumo4g04028 853 Pfam AAA lid domain 674 707 IPR041083 -
Pumo4g04028 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 262 IPR013083 -
Pumo4g04028 853 MobiDBLite consensus disorder prediction 378 421 - -
Pumo4g04028 853 Pfam ATPase family associated with various cellular activities (AAA) 501 646 IPR003959 GO:0005524|GO:0016887
Pumo4g04028 853 ProSiteProfiles BAH domain profile. 256 372 IPR001025 GO:0003682
Pumo4g04028 853 Pfam BAH domain 279 369 IPR001025 GO:0003682
Pumo4g04028 853 SMART AAA_5 496 650 IPR003593 GO:0016887
Pumo4g04028 853 MobiDBLite consensus disorder prediction 1 41 - -
Pumo4g04028 853 SUPERFAMILY FYVE/PHD zinc finger 187 250 IPR011011 -
Pumo4g04028 853 FunFam Origin recognition complex subunit 1 195 262 - -
Pumo4g04028 853 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 304 847 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04028 3 852 Core DNA Replication Machinery Family AT4G14700 61.789 0.0 1025
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo4g04028 AAA 7.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04028 K02603 - gmx:100798547 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04028 4 80971835 80979000 Pumo4g04028 4 80971835 80979000 ECH