Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04025 ATGAGGAAGCCAGAGGCGTGTAGTACCAAAAACAACAACAATAATATTAGCAAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACCATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGCTGTCGCCTTCGGTGGATCAATTACTTGAGGCCCGATCTTAAGAGAGGTGCATTCTCACCCGAGGAAGAGGAACTCATCATCCACTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGCGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCCACGACCACAACCTCAAGCGAGACCTCGTCTGAGCCAAGCAACAAAGACCTCAACATGGGAGGGTTTATGTCCACACAACATGCAGGCTTTGTGCCTATGTTCGGTTCATCTCCATCACCATCAATGCAAACCACAGCTTTCAATGCCATGATGCTGGAGCATGGACTAAACATGCCAGCTTCTGGAGGGTACTTGGAAGGCACAGGTCCATGCTTTTCTCAAAGTGAAAACGGAGTGTTTGGGAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTTGAGAACCTGAGTAGCACGTGCAAGAGAGAAACTAACAGCAGTTACTTTGATGACATAAACAGTATCCTTAATAACTGCAACATTGGCATAGGTAGTAGTGAAAATAAGGCTGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACAGGAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTCTTGGTTTTTCATACTGA 888 0.4538 MRKPEACSTKNNNNNISKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPEEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTSSETSSEPSNKDLNMGGFMSTQHAGFVPMFGSSPSPSMQTTAFNAMMLEHGLNMPASGGYLEGTGPCFSQSENGVFGSVNIGVEGDMFVPPLENLSSTCKRETNSSYFDDINSILNNCNIGIGSSENKAGVENLFQQELATGEWDFEELMKDVSSFPFLGFSY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04025 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Pumo4g04025 295 FunFam Transcription factor MYB46 75 145 - -
Pumo4g04025 295 PANTHER MYB DOMAIN PROTEIN 55 14 180 - -
Pumo4g04025 295 CDD SANT 76 116 IPR001005 -
Pumo4g04025 295 FunFam MYB transcription factor 18 74 - -
Pumo4g04025 295 MobiDBLite consensus disorder prediction 125 144 - -
Pumo4g04025 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Pumo4g04025 295 Gene3D - 75 146 - -
Pumo4g04025 295 SMART sant 73 121 IPR001005 -
Pumo4g04025 295 SMART sant 20 70 IPR001005 -
Pumo4g04025 295 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pumo4g04025 295 CDD SANT 24 68 IPR001005 -
Pumo4g04025 295 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pumo4g04025 295 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Pumo4g04025 295 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Pumo4g04025 295 Gene3D - 18 74 - -
Pumo4g04025 295 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04025 Pumo-Chr4 80912510 80915096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04025 1 290 MYB Transcription Factor Family AT5G12870 50.000 9.82e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g04025 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04025 K09422 - gmx:100799410 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04025 4 80912510 80915096 Pumo11g01642 11 47737990 47740433 PCT