Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04007 ATGAACTCCGACACGACGTCGTATTGGTGCTACAGCTGCACGCGTTTCGTTCACATCCAGGAGCAGAACCACGTCGTTTGCCCGCGCTGCCAGGGCGGCTTCGTCGAAAAGGTCACCGCCGGCGCCGGCCAATCGGGAAGGCAGGGGTTCCGCCGCCGACGCCGCAACGCCGGGAGCCACTCGCCCTTCAACCCGGTGATCGTGCTCCGGGGACCGGGGGAGGACGAAGAGAGCAGCTTTGAGTTATACTACGACGGCTTCGACGGCGAGGGGCTCCGCCCGCTGCCGTCCACGATGTCCGAGTTTCTGCTCGGATCAGGATTCGACCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGCCGGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTGGAAATCACCGAGTCTCACGTCGCCACGGAGACGCACTGCGCTGTGTGCAAGGAAGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCATCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAGCCGCGTCGGAAAACAGAGTCGCCGGTCAGATCGAGGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCAGGCGGCGGATTCGCCGTCGGGAGGTTCGCCGGCGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGTGGGAATTCGAACGAAGGTTCTAGAAGAATCTCTCTGGCGGTTGGAAGCGGCAGAGTTAGGGAGAGTCGTGGTGGATTTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGGGCTTTGACTAGAAGTCGTAGCCTTTCAACTTCACTCTTCAATAGAAGAAGAAGCACTAGAACCTGGATTTTGGGAAATTGA 951 0.5983 MNSDTTSYWCYSCTRFVHIQEQNHVVCPRCQGGFVEKVTAGAGQSGRQGFRRRRRNAGSHSPFNPVIVLRGPGEDEESSFELYYDGFDGEGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRPENPPASKAAIESMPTVEITESHVATETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAASENRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSNEGSRRISLAVGSGRVRESRGGFGRIFRNLFGRIGALTRSRSLSTSLFNRRRSTRTWILGN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04007 316 Pfam Ring finger domain 154 196 IPR001841 -
Pumo4g04007 316 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Pumo4g04007 316 Pfam Protein of unknown function (DUF1117) 219 304 IPR010543 -
Pumo4g04007 316 SUPERFAMILY RING/U-box 135 201 - -
Pumo4g04007 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 202 IPR013083 -
Pumo4g04007 316 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pumo4g04007 316 MobiDBLite consensus disorder prediction 45 65 - -
Pumo4g04007 316 SMART ring_2 155 195 IPR001841 -
Pumo4g04007 316 CDD RING-H2_RNF126-like 155 196 - -
Pumo4g04007 316 FunFam E3 ubiquitin-protein ligase RING1-like 117 202 - -
Pumo4g04007 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04007 Pumo-Chr4 80771233 80773038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g04007 41 207 C3H Transcription Factor Family AT5G01980 35.754 4.42e-28 111